# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.03520	d.92.1.14,d.166.1.1	123903,123904
1zgyA	272	12.96	a.123.1.1	125064
1ezm	301	13.12		
2e62A	61	17.84		
1pzlA	237	19.98	a.123.1.1	104393
1mpuA	138	20.08	d.169.1.1	85040
1fcyA	236	21.16	a.123.1.1	19282
1nq7A	244	23.61	a.123.1.1	92047
1nrlA	316	24.94	a.123.1.1	92091
2q22A	139	25.67		
1ctjA	89	30.12	a.3.1.1	15798
1bqbA	301	32.90	d.92.1.2	58962
2o36A	674	35.37		
1mmqA	170	35.83	d.92.1.11	40396
1hq8A	123	37.71	d.169.1.1	61127
2ax9A	256	40.12	a.123.1.1	127481
2cpmA	94	44.57		
3c5tA	122	45.49		
1upvA	257	47.62	a.123.1.1	113398
2gpuA	230	47.67	a.123.1.1	135493
2gdrA	202	48.74		
1hg4A	279	52.72	a.123.1.1	19333
1jdcA	429	53.44	b.71.1.1,c.1.8.1	27789,28776
8tlnE	316	57.08	d.92.1.2	59075
2bhvA	246	59.36		
2ox9A	140	59.69		
1u4gA	301	60.45	d.92.1.2	107670
2ax6A	256	63.36	a.123.1.1	127479
1njgA	250	64.68	c.37.1.20	85785
1c7kA	132	65.54	d.92.1.1	59078
1kapP	479	65.62	b.80.7.1,d.92.1.6	28012,40298
1go7P	462	66.32	b.80.7.1,d.92.1.6	76245,76246
1nu4A	97	68.70	d.58.7.1	80731
2aaxA	275	68.89		
1t7rA	269	70.53	a.123.1.1	106635
2ax8A	256	72.12		
1dunA	134	72.56	b.85.4.1	28371
2aclB	244	74.69		
2b5iB	214	75.28	b.1.2.1,b.1.2.1	127896,127897
2hktA	172	75.37		
1gwyA	175	75.60	b.97.1.1	83356
1n46A	258	76.06	a.123.1.1	85315
1kagA	173	77.96	c.37.1.2	72249
1jdc	429	78.13		
1n83A	270	78.47	a.123.1.1	80276
2inwA	133	81.28	d.110.8.1	137533
2h28A	130	82.14	d.110.8.1	135995
1iab	200	83.46		
1r55A	214	84.22	d.92.1.9	111694
2ghpA	292	84.53	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
1t07A	94	85.26	d.279.1.1	106196
1pk5A	248	86.99	a.123.1.1	88139
1xpcA	248	88.87	a.123.1.1	115738
2p8tA	200	89.80