# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.07007	d.92.1.14,d.166.1.1	123903,123904
1fcyA	236	9.081	a.123.1.1	19282
1zgyA	272	9.96	a.123.1.1	125064
1nq7A	244	12.46	a.123.1.1	92047
2e62A	61	13.19		
1pzlA	237	14.48	a.123.1.1	104393
1nrlA	316	15.56	a.123.1.1	92091
1upvA	257	20.38	a.123.1.1	113398
1ezm	301	23.53		
1ctjA	89	24.77	a.3.1.1	15798
2gpuA	230	25.07	a.123.1.1	135493
2aclB	244	26.17		
2ax9A	256	26.54	a.123.1.1	127481
2q22A	139	28.17		
1mpuA	138	30.01	d.169.1.1	85040
1hg4A	279	30.63	a.123.1.1	19333
1n46A	258	34.62	a.123.1.1	85315
2ax6A	256	35.85	a.123.1.1	127479
3c5tA	122	36.99		
2gdrA	202	37.19		
2o36A	674	37.64		
2ax8A	256	41.47		
1n83A	270	41.61	a.123.1.1	80276
2aaxA	275	42.02		
1t7rA	269	44.06	a.123.1.1	106635
2cpmA	94	44.23		
1mmqA	170	46.70	d.92.1.11	40396
1pq9A	253	48.37	a.123.1.1	95004
1pk5A	248	51.45	a.123.1.1	88139
1bqbA	301	52.47	d.92.1.2	58962
1kapP	479	54.00	b.80.7.1,d.92.1.6	28012,40298
1hq8A	123	54.97	d.169.1.1	61127
1c7kA	132	55.50	d.92.1.1	59078
1s9pA	227	56.11	a.123.1.1	105384
2g8lA	299	58.58	e.50.1.1	134775
1njgA	250	58.95	c.37.1.20	85785
1xpcA	248	59.43	a.123.1.1	115738
1qkmA	255	65.01	a.123.1.1	19309
2p8tA	200	65.05		
1ovlA	271	66.06	a.123.1.1	87455
1ymtA	246	66.61		
1u4gA	301	67.26	d.92.1.2	107670
2b5iB	214	70.22	b.1.2.1,b.1.2.1	127896,127897
3ertA	261	70.57	a.123.1.1	19292
1gwyA	175	71.61	b.97.1.1	83356
1iabA	200	73.01	d.92.1.8	40312
1iab	200	76.52		
1sh0A	510	77.53	e.8.1.4	98876
1t07A	94	78.43	d.279.1.1	106196
1ctj	89	79.99		
8tlnE	316	82.31	d.92.1.2	59075
3ct2A	382	83.21		
2ox9A	140	85.64		
1xiuA	230	86.48		
1kuh	132	87.11		
2cz2A	223	87.60		
1lamA	484	87.63	c.50.1.1,c.56.5.3	33166,33829
1sr7A	259	88.29	a.123.1.1	105957