# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.03818	d.92.1.14,d.166.1.1	123903,123904
1fcyA	236	12.91	a.123.1.1	19282
1zgyA	272	13.75	a.123.1.1	125064
1pzlA	237	14.12	a.123.1.1	104393
2e62A	61	16.18		
2q22A	139	17.16		
1nrlA	316	20.97	a.123.1.1	92091
1ezm	301	21.84		
1nq7A	244	22.77	a.123.1.1	92047
1ctjA	89	23.14	a.3.1.1	15798
2gpuA	230	30.66	a.123.1.1	135493
1mpuA	138	33.22	d.169.1.1	85040
1upvA	257	33.90	a.123.1.1	113398
1mmqA	170	36.38	d.92.1.11	40396
2o36A	674	37.07		
2ax9A	256	37.59	a.123.1.1	127481
2gdrA	202	41.43		
1bqbA	301	43.51	d.92.1.2	58962
1c7kA	132	45.51	d.92.1.1	59078
3c5tA	122	47.47		
2aclB	244	48.56		
1t7rA	269	51.81	a.123.1.1	106635
1hg4A	279	52.66	a.123.1.1	19333
1n46A	258	53.26	a.123.1.1	85315
1hq8A	123	56.56	d.169.1.1	61127
1jdcA	429	58.87	b.71.1.1,c.1.8.1	27789,28776
1s9pA	227	59.67	a.123.1.1	105384
2ax6A	256	60.40	a.123.1.1	127479
3ct2A	382	60.59		
1pk5A	248	60.96	a.123.1.1	88139
1dunA	134	61.11	b.85.4.1	28371
2ax8A	256	61.34		
1iab	200	61.56		
1njgA	250	63.48	c.37.1.20	85785
1go7P	462	68.39	b.80.7.1,d.92.1.6	76245,76246
1t07A	94	68.58	d.279.1.1	106196
1u4gA	301	68.78	d.92.1.2	107670
1ymtA	246	69.73		
1kapP	479	70.00	b.80.7.1,d.92.1.6	28012,40298
2cpmA	94	70.75		
2b5iB	214	71.33	b.1.2.1,b.1.2.1	127896,127897
1n83A	270	72.11	a.123.1.1	80276
1ctj	89	72.63		
1jdc	429	76.30		
2aaxA	275	76.43		
2g8lA	299	77.62	e.50.1.1	134775
1kuh	132	78.00		
2cz2A	223	78.42		
1xpcA	248	80.11	a.123.1.1	115738
1zeeA	403	80.79	a.266.1.2	124981
1qkmA	255	81.12	a.123.1.1	19309
1iabA	200	81.64	d.92.1.8	40312
1gdvA	85	81.74	a.3.1.1	60458
8tlnE	316	82.94	d.92.1.2	59075
1ovlA	271	83.01	a.123.1.1	87455
2bhvA	246	88.05		
1pq9A	253	88.24	a.123.1.1	95004
1kagA	173	89.42	c.37.1.2	72249