# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.02902	d.92.1.14,d.166.1.1	123903,123904
2q22A	139	3.677		
2g8lA	299	10.99	e.50.1.1	134775
1iab	200	12.41		
1iae	200	15.81		
1bli	483	23.40		
2amyA	246	24.18	c.108.1.10	127026
3ct2A	382	25.73		
1c7kA	132	27.18	d.92.1.1	59078
2inwA	133	28.44	d.110.8.1	137533
3b64A	112	29.87		
1mmqA	170	29.98	d.92.1.11	40396
2os5A	119	30.14		
1ogoX	574	31.63	b.133.1.1,b.80.1.10	92925,92926
1iazA	179	32.00	b.97.1.1	62131
1iabA	200	32.84	d.92.1.8	40312
2p35A	259	33.63		
1kuh	132	35.03		
1gd0A	122	38.63	d.80.1.3	39834
2gdgA	114	40.70	d.80.1.3	135015
1e43A	483	41.52	b.71.1.1,c.1.8.1	59217,59218
1cdzA	96	42.85	c.15.1.1	30925
2h28A	130	44.57	d.110.8.1	135995
1rkpA	326	45.48	a.211.1.2	97620
1g94A	448	52.76	b.71.1.1,c.1.8.1	65169,65170
1gwyA	175	53.52	b.97.1.1	83356
1uz3A	102	54.86		
1kapP	479	55.68	b.80.7.1,d.92.1.6	28012,40298
2ckiA	262	56.14		
1tbfA	347	58.76	a.211.1.2	106743
1j7nA	776	58.86	d.92.1.14,d.92.1.14,d.166.1.1	66409,66410,66411
1eudA	311	61.17	c.2.1.8,c.23.4.1	30312,31140
1lmlA	478	62.42	d.92.1.3	40295
2gdrA	202	62.87		
1lml	478	63.61		
1jk3A	158	64.39	d.92.1.11	66790
2ebn	289	68.59		
1mwwA	128	70.37	d.80.1.4	91483
1mpuA	138	72.08	d.169.1.1	85040
2aaxA	275	72.59		
2ntoA	201	78.27		
1t07A	94	78.37	d.279.1.1	106196
1yp1A	202	79.81		
2couA	109	79.85		
1hfoA	113	80.87	d.80.1.3	61006
1nq7A	244	84.28	a.123.1.1	92047
2v7pA	310	87.09		
1t7rA	269	88.18	a.123.1.1	106635
1pzlA	237	88.74	a.123.1.1	104393
1e6pA	499	89.28	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316