# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.07386	d.92.1.14,d.166.1.1	123903,123904
2o36A	674	13.39		
2q22A	139	13.53		
2gdrA	202	14.59		
1nq7A	244	18.70	a.123.1.1	92047
1mmqA	170	19.01	d.92.1.11	40396
1fcyA	236	19.85	a.123.1.1	19282
2e62A	61	20.35		
1go7P	462	23.64	b.80.7.1,d.92.1.6	76245,76246
1zgyA	272	24.92	a.123.1.1	125064
2cz2A	223	31.66		
1mpuA	138	32.96	d.169.1.1	85040
1hg4A	279	33.14	a.123.1.1	19333
1uzeA	589	33.48	d.92.1.5	108174
1pzlA	237	33.99	a.123.1.1	104393
1iab	200	34.60		
1iabA	200	36.73	d.92.1.8	40312
1iae	200	37.25		
1bqbA	301	42.24	d.92.1.2	58962
1c7kA	132	43.26	d.92.1.1	59078
1nrlA	316	43.38	a.123.1.1	92091
2h1nA	567	43.99		
2gpuA	230	48.42	a.123.1.1	135493
1v2aA	210	50.07	a.45.1.1,c.47.1.5	100263,100264
2ebn	289	50.09		
1bli	483	52.43		
1ctjA	89	53.18	a.3.1.1	15798
1n83A	270	54.62	a.123.1.1	80276
1gwyA	175	58.19	b.97.1.1	83356
1tltA	319	62.19	c.2.1.3,d.81.1.5	107135,107136
1t7rA	269	63.96	a.123.1.1	106635
1jk3A	158	64.53	d.92.1.11	66790
1kuh	132	65.11		
1jlwA	219	66.33	a.45.1.1,c.47.1.5	71741,71742
3c5tA	122	67.04		
2ajfA	597	68.65	d.92.1.5	126882
2cpmA	94	69.58		
1r42A	615	69.96	d.92.1.5	96968
2ntoA	201	71.86		
2pq8A	278	71.96		
1iazA	179	72.45	b.97.1.1	62131
1upvA	257	72.72	a.123.1.1	113398
1sat	471	74.21		
2aaxA	275	74.53		
1hq8A	123	75.03	d.169.1.1	61127
1i1iP	681	76.43	d.92.1.5	40297
830cA	168	77.05	d.92.1.11	40400
1ezm	301	77.39		
2ckiA	262	78.15		
1jdcA	429	80.30	b.71.1.1,c.1.8.1	27789,28776
2p8tA	200	80.52		
2g8lA	299	81.08	e.50.1.1	134775
2ox9A	140	81.85		
2dg7A	195	83.62		
1jdc	429	85.71