# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yqyA 523 0.008466 d.92.1.14,d.166.1.1 123903,123904 2aaxA 275 1.420 1o66A 275 1.483 c.1.12.8 92547 1satA 471 1.714 b.80.7.1,d.92.1.6 28014,40300 1jdcA 429 2.943 b.71.1.1,c.1.8.1 27789,28776 1nq7A 244 3.209 a.123.1.1 92047 1t7rA 269 4.380 a.123.1.1 106635 1sat 471 4.560 1e4cP 215 4.934 c.74.1.1 34969 1lh0A 213 4.992 c.61.1.1 73896 1jdc 429 6.323 2ajfA 597 6.451 d.92.1.5 126882 1db1A 259 7.359 a.123.1.1 19329 2ax9A 256 7.680 a.123.1.1 127481 1ea9C 583 7.720 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1gcyA 527 7.834 b.71.1.1,c.1.8.1 27788,28775 2ax6A 256 9.533 a.123.1.1 127479 1s9pA 227 9.784 a.123.1.1 105384 2gpuA 230 10.31 a.123.1.1 135493 1ssqA 267 10.33 b.81.1.6 105993 1d8cA 723 11.75 c.1.13.1 29325 2qo3A 915 11.84 2yvdA 431 12.31 2f48A 555 12.35 c.89.1.1 132915 2o36A 674 12.74 1i1iP 681 12.88 d.92.1.5 40297 1n46A 258 13.44 a.123.1.1 85315 1xqwA 293 13.84 1wgzA 510 15.35 1ie9A 259 15.61 a.123.1.1 62318 2ahdA 165 15.90 d.159.1.7 126752 2q22A 139 16.95 2o5cA 659 17.68 1mpuA 138 18.08 d.169.1.1 85040 1z5rA 306 19.75 c.56.5.1 124488 2ax8A 256 19.93 1x7oA 287 23.48 1sh0A 510 24.12 e.8.1.4 98876 2q3uA 383 24.99 d.126.1.6 139809 1y791 680 25.00 1yymG 313 25.14 d.172.1.1 124232 1g9mG 321 25.63 d.172.1.1 42492 1v4pA 157 25.86 d.67.1.2 113533 1jk3A 158 26.02 d.92.1.11 66790 1q7eA 428 26.19 c.123.1.1 96035 1ut8A 291 26.67 a.60.7.1,c.120.1.2 99908,99909 1nd1A 202 26.72 d.92.1.9 91808 2h1nA 567 27.05 3dni 260 28.27 2cz2A 223 29.30 1pzlA 237 30.14 a.123.1.1 104393 2p9wA 334 32.30 1e8yA 966 32.53 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2dkfA 431 32.84 1cs0A 1073 34.35 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1mmqA 170 35.24 d.92.1.11 40396 1ezfA 340 35.51 a.128.1.2 19440 17gsA 210 35.69 a.45.1.1,c.47.1.5 17524,32818 2qz7A 194 35.76 1v2aA 210 37.26 a.45.1.1,c.47.1.5 100263,100264 1jlwA 219 37.53 a.45.1.1,c.47.1.5 71741,71742 2o0mA 345 37.76 1sr7A 259 38.43 a.123.1.1 105957 1s4bP 674 38.57 d.92.1.5 105252 1upvA 257 38.70 a.123.1.1 113398 1pixA 587 38.72 c.14.1.4,c.14.1.4 118578,118579 1n83A 270 39.77 a.123.1.1 80276 1zeeA 403 40.14 a.266.1.2 124981 2q40A 367 41.42 e.50.1.1 139814 1uzeA 589 41.74 d.92.1.5 108174 3cs1A 219 42.00 1fcjA 322 42.03 c.79.1.1 35289 1bquA 215 42.18 b.1.2.1,b.1.2.1 22066,22067 2uz8A 174 42.89 1iab 200 44.55 2ghpA 292 45.01 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2ragA 417 45.12 1q4gA 553 46.13 a.93.1.2,g.3.11.1 95789,95790 1yp1A 202 47.26 1r55A 214 47.47 d.92.1.9 111694 1mtzA 293 48.20 c.69.1.7 79467 2e62A 61 49.07 2izpA 303 49.64 a.250.1.1 137826 1ovlA 271 50.60 a.123.1.1 87455 2pvqA 201 50.94 1m7vA 363 51.08 d.174.1.1 78748 2ffiA 288 51.51 c.1.9.15 133385 1pq9A 253 52.61 a.123.1.1 95004 1jf2A 195 52.89 a.39.1.5 62930 1siqA 392 53.34 a.29.3.1,e.6.1.1 105585,105586 1hg4A 279 53.90 a.123.1.1 19333 1zgyA 272 54.84 a.123.1.1 125064 2e8yA 718 55.05 1oihA 301 56.30 b.82.2.5 93051 1xfiA 367 58.14 e.50.1.1 109584 1iae 200 58.38 1ctjA 89 58.60 a.3.1.1 15798 2i3oA 516 60.11 d.153.1.6 137027 1c7kA 132 60.43 d.92.1.1 59078 1evlA 401 61.17 c.51.1.1,d.104.1.1 33202,40751 2obtA 327 61.18 1si6X 282 61.24 d.151.1.2 118968 1yw1A 442 62.09 c.1.16.4 124130 1n2aA 201 62.71 a.45.1.1,c.47.1.5 91553,91554 1rgzA 363 62.76 e.3.1.1 97457 1fs7A 485 63.62 a.138.1.3 19691 2c92A 160 64.75 2eb0A 307 65.75 3ertA 261 66.03 a.123.1.1 19292 1fcyA 236 67.76 a.123.1.1 19282 1xpcA 248 67.97 a.123.1.1 115738 1y8qA 346 69.20 1ab4 477 70.51 1el4A 195 73.73 a.39.1.5 59453 1sqnA 261 74.01 a.123.1.1 105944 1rydA 387 74.25 c.2.1.3,d.81.1.5 118801,118802 2dg7A 195 74.51 2p1zA 180 74.79 1pbtA 244 75.31 c.124.1.1 94416 2ajtA 500 75.33 b.43.2.2,c.85.1.2 126894,126895 1qkmA 255 76.02 a.123.1.1 19309 2j0fA 482 80.31 1opr 213 80.67 3c5tA 122 81.00 2c40A 312 81.65 2hpsA 186 83.48 3cqyA 370 83.70 1sr8A 298 83.82 e.54.1.1 105959 1pgtA 210 83.89 a.45.1.1,c.47.1.5 17515,32809 3inkC 133 84.01 a.26.1.2 16881 1tltA 319 85.13 c.2.1.3,d.81.1.5 107135,107136 1sflA 238 86.49 c.1.10.1 112077 1iabA 200 86.72 d.92.1.8 40312 3cogA 403 86.77 1aop 497 86.78 1wzlA 585 88.25 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1fnoA 417 89.26 d.58.19.1,c.56.5.4 70145,75841