# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.06848	d.92.1.14,d.166.1.1	123903,123904
2q22A	139	12.98		
2gdrA	202	14.59		
1fcyA	236	17.06	a.123.1.1	19282
2e62A	61	17.64		
1nq7A	244	20.17	a.123.1.1	92047
2o36A	674	22.83		
1pzlA	237	26.79	a.123.1.1	104393
1zgyA	272	28.82	a.123.1.1	125064
1mpuA	138	28.86	d.169.1.1	85040
1nrlA	316	30.77	a.123.1.1	92091
1ctjA	89	33.50	a.3.1.1	15798
1hg4A	279	34.33	a.123.1.1	19333
1bli	483	35.60		
2cz2A	223	36.43		
1c7kA	132	38.48	d.92.1.1	59078
1mmqA	170	40.62	d.92.1.11	40396
2gpuA	230	44.42	a.123.1.1	135493
1iab	200	44.83		
1t7rA	269	45.01	a.123.1.1	106635
2dg7A	195	48.20		
1n83A	270	48.44	a.123.1.1	80276
2aaxA	275	48.81		
2ebn	289	49.93		
1bqbA	301	50.47	d.92.1.2	58962
1iabA	200	51.68	d.92.1.8	40312
3c5tA	122	52.53		
1iae	200	52.76		
1jdc	429	53.21		
1ea9C	583	55.54	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
1uzeA	589	56.44	d.92.1.5	108174
1v2aA	210	56.55	a.45.1.1,c.47.1.5	100263,100264
1jdcA	429	59.62	b.71.1.1,c.1.8.1	27789,28776
1njgA	250	62.62	c.37.1.20	85785
1py0A	125	62.83	b.6.1.1	111645
2ax6A	256	63.76	a.123.1.1	127479
1kuh	132	64.81		
3ct2A	382	65.22		
2ax9A	256	66.02	a.123.1.1	127481
1jlwA	219	67.73	a.45.1.1,c.47.1.5	71741,71742
1pq9A	253	67.80	a.123.1.1	95004
1go7P	462	68.10	b.80.7.1,d.92.1.6	76245,76246
1pk5A	248	68.84	a.123.1.1	88139
2g8lA	299	68.87	e.50.1.1	134775
1upvA	257	69.12	a.123.1.1	113398
1hq8A	123	77.24	d.169.1.1	61127
2ckiA	262	78.64		
2h1nA	567	79.88		
2ox9A	140	80.48		
2ntoA	201	81.70		
1t07A	94	82.08	d.279.1.1	106196
2ax8A	256	84.26		
2cpmA	94	86.59