# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.01345	d.92.1.14,d.166.1.1	123903,123904
2q22A	139	14.36		
1pzlA	237	16.45	a.123.1.1	104393
1zgyA	272	17.38	a.123.1.1	125064
2gdrA	202	21.61		
1c7kA	132	22.28	d.92.1.1	59078
2o36A	674	23.28		
2gpuA	230	23.45	a.123.1.1	135493
1nq7A	244	23.55	a.123.1.1	92047
1uzeA	589	26.22	d.92.1.5	108174
1fcyA	236	26.29	a.123.1.1	19282
1nrlA	316	27.36	a.123.1.1	92091
1kagA	173	29.84	c.37.1.2	72249
2e62A	61	32.65		
1mpuA	138	37.82	d.169.1.1	85040
3c5tA	122	39.26		
1ctjA	89	41.14	a.3.1.1	15798
1xclA	235	44.32	c.66.1.16	115127
1n46A	258	45.20	a.123.1.1	85315
1ovlA	271	46.48	a.123.1.1	87455
1upvA	257	48.25	a.123.1.1	113398
1xpcA	248	53.48	a.123.1.1	115738
1bqbA	301	53.70	d.92.1.2	58962
2bhvA	246	55.30		
1ezm	301	55.33		
2aaxA	275	55.95		
1kuh	132	58.19		
1iabA	200	58.33	d.92.1.8	40312
1bli	483	58.38		
2pt5A	168	59.45		
2uz8A	174	59.51		
1tltA	319	59.66	c.2.1.3,d.81.1.5	107135,107136
1qkmA	255	60.02	a.123.1.1	19309
1ymtA	246	60.56		
1iab	200	63.52		
1mmqA	170	66.04	d.92.1.11	40396
1gdvA	85	66.30	a.3.1.1	60458
1n83A	270	66.61	a.123.1.1	80276
3ertA	261	67.19	a.123.1.1	19292
1ea9C	583	67.52	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
1s9pA	227	69.87	a.123.1.1	105384
2b5iB	214	74.43	b.1.2.1,b.1.2.1	127896,127897
1gwyA	175	74.61	b.97.1.1	83356
2cz2A	223	75.85		
1pk5A	248	78.34	a.123.1.1	88139
2cpmA	94	78.46		
1i1iP	681	81.22	d.92.1.5	40297
1t7rA	269	83.78	a.123.1.1	106635
2h1nA	567	84.07		
2p8tA	200	85.16		
2ox9A	140	85.35