# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.05647	d.92.1.14,d.166.1.1	123903,123904
1zgyA	272	13.31	a.123.1.1	125064
2q22A	139	13.88		
1pzlA	237	20.00	a.123.1.1	104393
2gdrA	202	20.10		
2e62A	61	21.46		
1uzeA	589	24.40	d.92.1.5	108174
1fcyA	236	26.38	a.123.1.1	19282
1kagA	173	28.52	c.37.1.2	72249
3c5tA	122	30.18		
1nq7A	244	32.57	a.123.1.1	92047
1ezm	301	34.75		
1c7kA	132	35.23	d.92.1.1	59078
1bli	483	40.23		
2o36A	674	40.34		
2gpuA	230	42.42	a.123.1.1	135493
2cz2A	223	43.05		
1iabA	200	44.55	d.92.1.8	40312
1gwyA	175	45.62	b.97.1.1	83356
1iab	200	46.58		
1iazA	179	48.18	b.97.1.1	62131
2ebn	289	50.21		
1tltA	319	50.94	c.2.1.3,d.81.1.5	107135,107136
1mpuA	138	51.05	d.169.1.1	85040
1mmqA	170	55.50	d.92.1.11	40396
1ctjA	89	55.80	a.3.1.1	15798
2uz8A	174	55.88		
1jalA	363	56.05	c.37.1.8,d.15.10.2	84138,84139
1iae	200	62.41		
2g8lA	299	62.69	e.50.1.1	134775
1ymtA	246	63.59		
1e43A	483	64.39	b.71.1.1,c.1.8.1	59217,59218
1t07A	94	68.47	d.279.1.1	106196
1nrlA	316	71.21	a.123.1.1	92091
1upvA	257	73.30	a.123.1.1	113398
2cpmA	94	73.58		
1ut8A	291	75.81	a.60.7.1,c.120.1.2	99908,99909
1nu4A	97	75.98	d.58.7.1	80731
3ct2A	382	76.13		
2h1nA	567	76.27		
1kapP	479	77.97	b.80.7.1,d.92.1.6	28012,40298
1njgA	250	80.43	c.37.1.20	85785
1bqbA	301	81.54	d.92.1.2	58962
1kuh	132	83.71		
3cjhB	64	84.28		
1n6aA	259	85.66	b.76.2.1,b.85.7.1	80121,80122
1ogoX	574	86.18	b.133.1.1,b.80.1.10	92925,92926
1dunA	134	86.97	b.85.4.1	28371
2ox9A	140	87.29		
1n46A	258	89.89	a.123.1.1	85315