# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.2862	d.92.1.14,d.166.1.1	123903,123904
1c7kA	132	10.00	d.92.1.1	59078
1kuh	132	18.76		
1go7P	462	20.77	b.80.7.1,d.92.1.6	76245,76246
2q22A	139	32.00		
1ogoX	574	34.08	b.133.1.1,b.80.1.10	92925,92926
1mmqA	170	36.28	d.92.1.11	40396
1iab	200	36.83		
1satA	471	41.97	b.80.7.1,d.92.1.6	28014,40300
1hfc	169	42.93		
1xclA	235	46.40	c.66.1.16	115127
830cA	168	47.15	d.92.1.11	40400
2cbiA	594	47.96	a.246.1.1,c.1.8.10,d.92.2.3	130179,130180,130181
1iabA	200	49.01	d.92.1.8	40312
2ghpA	292	51.71	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
1iazA	179	53.64	b.97.1.1	62131
2gpuA	230	54.61	a.123.1.1	135493
2ckiA	262	56.06		
1ne6A	283	59.32	b.82.3.2,b.82.3.2	91831,91832
1kugA	203	59.67	d.92.1.9	73008
1gwyA	175	64.16	b.97.1.1	83356
1zx0A	236	68.94	c.66.1.16	125757
1nd1A	202	72.28	d.92.1.9	91808
1jk3A	158	74.88	d.92.1.11	66790
1mpuA	138	75.59	d.169.1.1	85040
1hfcA	169	77.85	d.92.1.11	40335
1iae	200	79.24		
1rm8A	169	80.39	d.92.1.11	97660
2aaxA	275	82.39		
1kapP	479	85.83	b.80.7.1,d.92.1.6	28012,40298
1g12A	167	87.47	d.92.1.12	60193