# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yqyA	523	0.03494	d.92.1.14,d.166.1.1	123903,123904
2q22A	139	10.80		
1mpuA	138	21.62	d.169.1.1	85040
2eo5A	419	23.23		
1c7kA	132	29.41	d.92.1.1	59078
1bli	483	41.83		
2inwA	133	44.72	d.110.8.1	137533
2calA	154	47.08		
1kuh	132	49.66		
1c4kA	730	52.47	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
1zybA	232	52.72	a.4.5.4,b.82.3.2	125815,125816
1z9nA	177	58.76		
1ugpA	203	62.53	d.149.1.1	107831
2g8lA	299	64.91	e.50.1.1	134775
1h32A	261	68.34	a.3.1.8,a.3.1.8	76618,76619
2gdrA	202	70.92		
1e43A	483	71.53	b.71.1.1,c.1.8.1	59217,59218
2ezvA	269	72.25		
3b89A	252	72.61		
1ireA	204	77.25	d.149.1.1	76769
1z9pA	155	79.50		
2cbiA	594	80.78	a.246.1.1,c.1.8.10,d.92.2.3	130179,130180,130181
2ghpA	292	85.08	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
2h28A	130	85.14	d.110.8.1	135995
1hq8A	123	87.88	d.169.1.1	61127