# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cex	214	2.004		
1yqyA	523	3.280	d.92.1.14,d.166.1.1	123903,123904
2c40A	312	3.636		
2bh9A	489	6.187		
1fcjA	322	9.910	c.79.1.1	35289
1r1hA	696	11.71	d.92.1.4	104756
1cexA	214	11.77	c.69.1.30	31285
2p41A	305	11.85		
2q22A	139	13.63		
1qo7A	394	13.72	c.69.1.11	34697
1n3yA	198	14.40	c.62.1.1	79976
3c1lA	188	18.87		
2ibaA	302	21.47	d.96.1.4,d.96.1.4	137178,137179
2qsjA	154	21.93		
1uk8A	282	22.27	c.69.1.10	107907
1d4xA	375	25.69	c.55.1.1,c.55.1.1	59107,59108
2pqqA	149	28.52		
2hkjA	469	28.77	a.156.1.3,d.14.1.3,d.122.1.2	136553,136554,136555
1oxsC	353	30.65	b.40.6.3,c.37.1.12	87519,87520
1uhkA	191	30.85	a.39.1.5	119681
2fnuA	375	31.61	c.67.1.4	133831
2zfoA	140	32.48		
1r0wA	286	32.64	c.37.1.12	96754
1t6cA	315	33.46	c.55.1.8,c.55.1.8	106558,106559
1t1uA	639	34.17	c.43.1.3,c.43.1.3	119110,119111
2q01A	497	34.61		
3b4tA	262	34.79		
1b0uA	262	34.80	c.37.1.12	32370
1r4uA	301	37.16	d.96.1.4,d.96.1.4	97047,97048
3b6eA	216	37.41		
1zu0A	529	37.53		
1b43A	340	38.09	a.60.7.1,c.120.1.2	18092,33362
1g2nA	264	38.50	a.123.1.1	60227
1mx0A	472	40.34	a.156.1.3,d.14.1.3,d.122.1.2	79618,79619,79620
2p0iA	456	40.54		
1azwA	313	40.61	c.69.1.7	34658
1el4A	195	40.75	a.39.1.5	59453
1oxxK	353	40.88	b.40.6.3,c.37.1.12	93715,93716
1w7jA	795	42.42	b.34.3.1,c.37.1.9	120688,120689
2pfxA	191	42.88		
1xiuA	230	42.97		
1wa5C	960	43.03	a.118.1.1	114433
1znwA	207	43.64	c.37.1.1	125412
2hpsA	186	44.09		
1jf2A	195	44.66	a.39.1.5	62930
2javA	279	46.03	d.144.1.7	138243
1ve5A	311	46.93	c.79.1.1	120013
1a76	326	49.11		
1k8kA	418	49.19	c.55.1.1,c.55.1.1	68305,68306
1kfrA	147	49.24	a.1.1.2	72424
1zgyA	272	50.00	a.123.1.1	125064
2px2A	269	50.94		
2c43A	323	52.91		
2oosA	338	53.72		
1gp6A	356	54.41	b.82.2.1	65441
2po3A	424	56.06		
1eny	268	57.20		
1wrrA	301	59.10	d.96.1.4,d.96.1.4	121204,121205
2qolA	376	60.12		
1jf3A	147	61.66	a.1.1.2	71642
1pzlA	237	62.07	a.123.1.1	104393
2oz3A	404	62.19		
2oy0A	262	62.45		
1din	236	62.91		
2pcjA	224	63.58		
1y8qA	346	63.72		
1to6A	371	63.98	c.141.1.1	107170
1p9bA	442	64.42	c.37.1.10	94385
1tbfA	347	66.78	a.211.1.2	106743
2ejqA	130	67.16		
2aeuA	374	67.48	c.67.1.8	126646
1j5sA	463	68.42	c.1.9.8	71580
2z69A	154	70.68		
2it1A	362	72.71		
1zybA	232	73.12	a.4.5.4,b.82.3.2	125815,125816
3bpzA	202	74.73		
2g0bA	198	76.39		
2p1tA	240	76.69		
1y791	680	76.79		
3b9gA	328	77.96		
3brbA	313	78.38		
3c9qA	205	78.68		
2oo3A	283	78.81		
2r11A	306	79.52		
1g5bA	221	80.48	d.159.1.3	60261
1mkmA	249	81.10	a.4.5.33,d.110.2.2	79242,79243
2d2mA	140	81.64		
1z7wA	322	81.79	c.79.1.1	124674
2yx0A	342	83.05		
2eg4A	230	83.11		
3bq5A	766	84.90		
1a76A	326	85.04	a.60.7.1,c.120.1.2	18091,33361
3cj1A	456	86.61		
1enp	312	87.56		
1wm1A	317	87.63	c.69.1.7	109405