# List of top-scoring protein chains for T0489.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1pk1A	89	9.430	a.60.1.2	118711
1xa6A	466	19.46	a.116.1.1,d.93.1.1,g.49.1.1	115030,115031,115032
1a28A	256	20.99	a.123.1.1	19290
1e3kA	258	21.31	a.123.1.1	59193
1sr7A	259	21.43	a.123.1.1	105957
1sqnA	261	21.59	a.123.1.1	105944
2nygA	273	32.25		
1t07A	94	33.82	d.279.1.1	106196
1c3yA	108	41.79	a.39.2.1	17387
2hpkA	208	48.66		
3bg9A	718	59.35		
1wzaA	488	63.35	b.71.1.1,c.1.8.1	121489,121490
2qhpA	296	65.91		
3bg3A	718	66.11		
1w3eX	101	69.58		
1cx4A	305	71.07	b.82.3.2,b.82.3.2	59099,59100
2zcfA	206	83.48		
2cz1A	206	85.48	d.149.1.1	131033
1kw4A	89	85.50	a.60.1.2	73077
2qdyA	207	85.55