# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ayl	541	3.436		
1otjA	283	3.445	b.82.2.5	93517
2e62A	61	4.384		
1jayA	212	9.173	c.2.1.6	66478
2z69A	154	14.14		
1u7eB	154	14.35		
2os5A	119	15.29		
2q22A	139	18.55		
2pl5A	366	21.33		
1rl3A	288	22.80	b.82.3.2,b.82.3.2	104975,104976
2qniA	219	25.35		
1zybA	232	25.35	a.4.5.4,b.82.3.2	125815,125816
1jdc	429	26.43		
1ne6A	283	26.51	b.82.3.2,b.82.3.2	91831,91832
1nu5A	370	27.70	c.1.11.2,d.54.1.1	92183,92184
2pqqA	149	28.82		
1o7fA	469	29.05	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
1bplB	294	30.04	b.71.1.1	27716
1sxjC	340	30.40	a.80.1.1,c.37.1.20	106085,106086
1rgs	288	30.61		
2gauA	232	31.72	a.4.5.4,b.82.3.2	134894,134895
2zl4A	196	34.80		
1vp6A	138	36.00	b.82.3.2	113939
2d93A	134	36.67		
1amy	403	41.67		
1aoiB	87	42.76	a.22.1.1	16470
2cbyA	208	45.14	c.14.1.1	130202
2bj7A	138	47.59	a.43.1.3,d.58.18.4	128608,128609
1x54A	434	50.25		
1o6eA	235	50.36	b.57.1.1	81083
2aibA	98	52.72	a.134.1.1	126824
1cnoA	87	54.70	a.3.1.1	15814
1jdcA	429	57.81	b.71.1.1,c.1.8.1	27789,28776
1nuiA	255	60.26	e.13.1.2,g.41.3.2	86194,86195
1lfbA	99	61.38	a.4.1.1	15989
2hueC	84	61.42	a.22.1.1	136776
2jg9C	131	63.02		
1siqA	392	65.82	a.29.3.1,e.6.1.1	105585,105586
1gdvA	85	66.20	a.3.1.1	60458
1go3F	107	66.45	a.60.8.2	65407
1e29A	135	67.29	a.3.1.1	59161
1e1oA	504	68.82	b.40.4.1,d.104.1.1	25258,40714
1rlrA	761	70.04	a.98.1.1,c.7.1.2	18753,30679
1qq7A	253	70.58	c.108.1.1	43329
1ea9C	583	72.16	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
8rucI	123	74.10	d.73.1.1	39629
2guyA	478	74.50	b.71.1.1,c.1.8.1	135754,135755
1tbbA	332	75.54	a.211.1.2	106741
3bc9A	599	76.80		
2fvhA	120	77.42		
1in4A	334	78.06	a.4.5.11,c.37.1.20	62597,62598
1t07A	94	79.24	d.279.1.1	106196
2oocA	113	82.20		
2z1qA	577	83.41		
1f3lA	321	84.48	c.66.1.6	59630
1rylA	167	84.85	d.276.1.1	105124
1kpeA	126	85.66	d.13.1.1	37508
1eovA	487	87.52	b.40.4.1,d.104.1.1	25239,40760
1zz1A	369	88.94		
1rkpA	326	89.00	a.211.1.2	97620
3d5lA	221	89.72