# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1otjA 283 1.259 b.82.2.5 93517 1zybA 232 1.622 a.4.5.4,b.82.3.2 125815,125816 1u7eB 154 1.631 2e62A 61 1.650 2d93A 134 2.971 2z69A 154 3.329 1jayA 212 3.636 c.2.1.6 66478 1rl3A 288 3.754 b.82.3.2,b.82.3.2 104975,104976 1ayl 541 4.678 2os5A 119 4.794 2qniA 219 5.399 2q22A 139 5.757 1o7fA 469 6.346 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1ne6A 283 6.593 b.82.3.2,b.82.3.2 91831,91832 1o6eA 235 7.662 b.57.1.1 81083 1rgs 288 9.053 2pqqA 149 9.139 1fgkA 310 10.07 d.144.1.7 41693 1p5dX 463 10.22 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2gauA 232 10.73 a.4.5.4,b.82.3.2 134894,134895 1vp6A 138 11.26 b.82.3.2 113939 1j0mA 752 11.68 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 2ywwA 149 11.90 2om6A 235 13.98 1e29A 135 17.87 a.3.1.1 59161 2fvhA 120 20.07 1eyqA 222 20.85 d.36.1.1 38534 1cx4A 305 23.24 b.82.3.2,b.82.3.2 59099,59100 1wpoA 256 24.91 b.57.1.1 27012 119l 164 25.08 1wv9A 94 25.45 2bv6A 142 25.56 1aoiB 87 28.46 a.22.1.1 16470 2posA 94 30.00 2pexA 153 32.93 1z91A 147 33.59 a.4.5.28 124736 1pc6A 146 34.49 d.262.1.1 94430 2nruA 307 35.02 1go3F 107 38.09 a.60.8.2 65407 1d09B 153 38.41 d.58.2.1,g.41.7.1 39015,45267 1el4A 195 39.65 a.39.1.5 59453 1bplB 294 39.91 b.71.1.1 27716 1kpeA 126 40.36 d.13.1.1 37508 1tbbA 332 40.67 a.211.1.2 106741 1rlrA 761 40.68 a.98.1.1,c.7.1.2 18753,30679 1f0jA 377 40.98 a.211.1.2 19346 1xo0A 324 41.20 a.60.9.1,d.163.1.1 115674,115675 3cjhB 64 41.55 2airB 153 42.35 d.58.2.1,g.41.7.1 126832,126833 1utrA 96 43.85 a.101.1.1 18817 3cq5A 369 44.44 2hueC 84 44.55 a.22.1.1 136776 1tbfA 347 45.77 a.211.1.2 106743 2zl4A 196 46.19 2couA 109 47.12 2bj7A 138 47.26 a.43.1.3,d.58.18.4 128608,128609 1fl1A 230 47.44 b.57.1.1 27023 1in6A 334 47.48 a.4.5.11,c.37.1.20 62601,62602 9atcB 146 48.55 d.58.2.1,g.41.7.1 39057,45309 1gmxA 108 48.74 c.46.1.3 65355 1lnwA 147 49.84 a.4.5.28 78104 1rkpA 326 50.42 a.211.1.2 97620 1y2kA 349 50.58 a.211.1.2 122571 1knqA 175 50.74 c.37.1.17 72786 2d7lA 81 52.43 3boqA 160 53.09 1q3eA 207 53.59 b.82.3.2 95669 1in4A 334 53.81 a.4.5.11,c.37.1.20 62597,62598 3d5lA 221 54.36 8atcB 154 55.16 d.58.2.1,g.41.7.1 39027,45279 1lufA 343 55.34 d.144.1.7 78223 2qf7A 1165 56.41 3bjaA 139 56.84 1t07A 94 57.30 d.279.1.1 106196 1mz4A 137 57.66 a.3.1.1 91496 1acfA 125 58.55 d.110.1.1 40882 2qneA 495 59.38 1d2kA 392 59.41 c.1.8.5,d.26.3.1 29008,38442 2vroA 532 59.78 2icgA 160 59.83 2i9fA 69 60.14 1nuiA 255 60.46 e.13.1.2,g.41.3.2 86194,86195 2ct9A 208 60.53 2og9A 393 60.57 1jdc 429 60.81 2iufA 688 60.97 1lfbA 99 61.61 a.4.1.1 15989 2ebnA 289 61.64 c.1.8.5 28990 1e1oA 504 62.18 b.40.4.1,d.104.1.1 25258,40714 1jmxA 494 62.26 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2aibA 98 62.52 a.134.1.1 126824 2rkhA 180 62.56 2yvuA 186 63.44 1lkvX 232 65.23 a.118.14.1 73980 3cjnA 162 66.29 1w63A 618 67.32 i.23.1.1 109192 1lc5A 364 68.09 c.67.1.1 73827 1ejxA 100 68.64 d.8.1.1 83182 1rylA 167 68.75 d.276.1.1 105124 2fv7A 331 68.87 c.72.1.1 134197 1zx4A 192 69.00 2cz2A 223 69.53 2cbyA 208 70.18 c.14.1.1 130202 1zklA 353 70.26 2jnsA 90 70.84 1x54A 434 73.38 1b8aA 438 73.82 b.40.4.1,d.104.1.1 25244,40765 2hoqA 241 73.97 104lA 166 74.10 d.2.1.3 36969 1qq7A 253 74.43 c.108.1.1 43329 2pbkA 228 75.88 2pp3A 398 76.71 2r40D 266 76.85 1u04A 771 77.09 b.34.14.1,c.55.3.10 107539,107540 1vapA 123 78.33 a.133.1.2 19548 3d0jA 140 78.76 1z1lA 345 79.34 3deuA 166 79.46 2acmA 66 79.93 1g291 372 80.64 2r2yA 153 81.54 1im8A 244 82.13 c.66.1.14 66212 1tazA 365 83.93 a.211.1.2 106734 2fkiA 126 87.13 d.198.3.1 133657 1hfoA 113 88.03 d.80.1.3 61006 1njgA 250 88.35 c.37.1.20 85785 2citA 282 88.56 c.1.8.3 130499 1uxjA 309 88.86 c.2.1.5,d.162.1.1 108112,108113