# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	3.048		
1otjA	283	3.550	b.82.2.5	93517
1ayl	541	5.883		
2os5A	119	11.06		
1nu5A	370	12.53	c.1.11.2,d.54.1.1	92183,92184
1jayA	212	13.72	c.2.1.6	66478
2qniA	219	15.42		
1sxjC	340	24.50	a.80.1.1,c.37.1.20	106085,106086
2q22A	139	26.34		
2z69A	154	28.50		
2zl4A	196	32.62		
1o7fA	469	33.45	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
1u7eB	154	34.63		
2oocA	113	35.61		
1jdc	429	35.65		
1f3lA	321	38.44	c.66.1.6	59630
2bj7A	138	40.84	a.43.1.3,d.58.18.4	128608,128609
1qguA	478	42.67	c.92.2.3	35625
1t07A	94	42.97	d.279.1.1	106196
1oaaA	259	43.17	c.2.1.2	29829
1bplB	294	44.74	b.71.1.1	27716
2cbyA	208	52.69	c.14.1.1	130202
1nuiA	255	53.82	e.13.1.2,g.41.3.2	86194,86195
2pl5A	366	53.89		
1o6eA	235	54.51	b.57.1.1	81083
2aibA	98	61.04	a.134.1.1	126824
2qneA	495	63.55		
1gdvA	85	66.03	a.3.1.1	60458
1ne6A	283	66.66	b.82.3.2,b.82.3.2	91831,91832
1knqA	175	68.08	c.37.1.17	72786
1rl3A	288	69.01	b.82.3.2,b.82.3.2	104975,104976
1vp6A	138	69.76	b.82.3.2	113939
1cnoA	87	70.74	a.3.1.1	15814
2pqqA	149	72.17		
1x54A	434	72.81		
2jg9C	131	76.01		
3cq5A	369	76.38		
1oixA	191	76.67	c.37.1.8	118710
2fvhA	120	77.34		
3b64A	112	78.42		
1v74B	87	79.27	a.24.20.1	100443
1u02A	239	80.35	c.108.1.15	107538
1ylhA	560	81.58		
1tbbA	332	86.38	a.211.1.2	106741
1yzqA	170	87.73	c.37.1.8	124286