# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	3.066		
1otjA	283	4.737	b.82.2.5	93517
1ayl	541	8.080		
2os5A	119	11.11		
1nu5A	370	12.73	c.1.11.2,d.54.1.1	92183,92184
2qniA	219	21.67		
1sxjC	340	22.82	a.80.1.1,c.37.1.20	106085,106086
1jayA	212	22.85	c.2.1.6	66478
2oocA	113	25.51		
2z69A	154	26.10		
1o7fA	469	30.22	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
1u7eB	154	33.20		
2q22A	139	33.54		
1f3lA	321	36.07	c.66.1.6	59630
1jdc	429	39.21		
1t07A	94	40.69	d.279.1.1	106196
2bj7A	138	41.81	a.43.1.3,d.58.18.4	128608,128609
1kpeA	126	43.24	d.13.1.1	37508
1rl3A	288	43.55	b.82.3.2,b.82.3.2	104975,104976
1ne6A	283	45.36	b.82.3.2,b.82.3.2	91831,91832
1qguA	478	47.92	c.92.2.3	35625
1tbbA	332	51.12	a.211.1.2	106741
2zl4A	196	51.19		
2pl5A	366	53.37		
1zybA	232	55.12	a.4.5.4,b.82.3.2	125815,125816
1vp6A	138	58.15	b.82.3.2	113939
1bplB	294	58.15	b.71.1.1	27716
2fvhA	120	61.62		
2pqqA	149	63.20		
1y2kA	349	63.66	a.211.1.2	122571
1gdvA	85	64.54	a.3.1.1	60458
1cnoA	87	66.10	a.3.1.1	15814
1o6eA	235	67.16	b.57.1.1	81083
1aoiB	87	67.45	a.22.1.1	16470
2aibA	98	68.55	a.134.1.1	126824
1nuiA	255	70.54	e.13.1.2,g.41.3.2	86194,86195
1knqA	175	71.42	c.37.1.17	72786
1rgs	288	72.14		
3cq5A	369	72.45		
1oixA	191	72.63	c.37.1.8	118710
1oaaA	259	73.76	c.2.1.2	29829
1yzqA	170	74.10	c.37.1.8	124286
1f0jA	377	74.62	a.211.1.2	19346
1e1oA	504	75.01	b.40.4.1,d.104.1.1	25258,40714
2cbyA	208	75.20	c.14.1.1	130202
3d5lA	221	76.38		
1in4A	334	77.45	a.4.5.11,c.37.1.20	62597,62598
2qneA	495	78.14		
1u02A	239	78.26	c.108.1.15	107538
1v74B	87	78.97	a.24.20.1	100443
1ylhA	560	79.27		
1x54A	434	81.26		
1wznA	252	83.84	c.66.1.43	121525
2gauA	232	87.78	a.4.5.4,b.82.3.2	134894,134895
2ovyA	362	88.15		
1lylA	504	88.19	b.40.4.1,d.104.1.1	25261,40717
2r8qA	359	88.26		
3b64A	112	89.17