# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ayl	541	4.461		
1zybA	232	6.886	a.4.5.4,b.82.3.2	125815,125816
2os5A	119	9.197		
1otjA	283	9.313	b.82.2.5	93517
2q22A	139	9.356		
2oocA	113	10.77		
1j0mA	752	10.85	a.102.3.2,b.24.1.1,b.30.5.2	83910,83911,83912
2pqqA	149	15.28		
2qneA	495	15.42		
1o6eA	235	16.19	b.57.1.1	81083
1u7eB	154	16.21		
2couA	109	17.65		
2z69A	154	21.86		
1z1lA	345	22.27		
2gauA	232	23.01	a.4.5.4,b.82.3.2	134894,134895
2guyA	478	23.05	b.71.1.1,c.1.8.1	135754,135755
1rkpA	326	23.41	a.211.1.2	97620
1rgs	288	26.06		
1tbbA	332	26.28	a.211.1.2	106741
1nu5A	370	26.29	c.1.11.2,d.54.1.1	92183,92184
1ylhA	560	27.06		
1y2kA	349	27.81	a.211.1.2	122571
2ovyA	362	28.63		
1fl1A	230	28.63	b.57.1.1	27023
3b64A	112	28.99		
2qf7A	1165	29.31		
1f0jA	377	29.55	a.211.1.2	19346
1vp6A	138	34.16	b.82.3.2	113939
1v7oA	165	35.08	d.67.1.2	100480
1rl3A	288	37.91	b.82.3.2,b.82.3.2	104975,104976
2ousA	331	37.92		
1tbfA	347	39.65	a.211.1.2	106743
1t07A	94	41.00	d.279.1.1	106196
2d93A	134	44.50		
2r8qA	359	44.68		
1zklA	353	45.94		
1pc6A	146	45.95	d.262.1.1	94430
2ivyA	101	49.08		
2hd1A	326	49.89	a.211.1.2	136338
1v4pA	157	51.04	d.67.1.2	113533
1wpoA	256	51.68	b.57.1.1	27012
2aaaA	484	51.97	b.71.1.1,c.1.8.1	27777,28764
1hfoA	113	52.09	d.80.1.3	61006
2ebnA	289	53.14	c.1.8.5	28990
1at3A	247	56.29	b.57.1.1	27021
1gifA	115	56.78	d.80.1.3	39837
1so2A	420	56.79	a.211.1.2	98936
1tazA	365	58.16	a.211.1.2	106734
2qulA	290	59.47		
1octC	156	60.24	a.4.1.1,a.35.1.1	15991,17017
1o7fA	469	61.33	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
1cdzA	96	63.58	c.15.1.1	30925
1qjtA	99	63.67	a.39.1.6	17335
2qalM	117	64.66		
2qn6A	414	65.62		
3b4uA	294	66.42		
2p7jA	287	68.11		
1d2kA	392	70.62	c.1.8.5,d.26.3.1	29008,38442
2ogeA	399	72.64		
1aoiB	87	74.03	a.22.1.1	16470
2zdhA	319	74.38		
2i9fA	69	74.41		
1g2rA	100	76.33	d.192.1.1	60231
2h28A	130	78.44	d.110.8.1	135995
2rfgA	297	79.87		
1gefA	123	80.26	c.52.1.18	60465
2aaa	484	81.80		
2hueC	84	82.16	a.22.1.1	136776
1e1oA	504	82.57	b.40.4.1,d.104.1.1	25258,40714
1e9lA	377	83.91	c.1.8.5,d.26.3.1	59395,59396
1goiA	499	84.38	b.72.2.1,c.1.8.5,d.26.3.1	65413,65414,65415
2da7A	71	86.35		
2qniA	219	89.11		
2a1xA	308	89.38	b.82.2.9	126022