# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1otjA	283	2.906	b.82.2.5	93517
2e62A	61	2.971		
1ayl	541	4.932		
1jayA	212	9.011	c.2.1.6	66478
1u7eB	154	12.19		
2z69A	154	12.96		
2pqqA	149	17.37		
2gauA	232	17.57	a.4.5.4,b.82.3.2	134894,134895
1zybA	232	18.41	a.4.5.4,b.82.3.2	125815,125816
2pl5A	366	19.73		
1o7fA	469	20.35	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
2os5A	119	26.82		
2qniA	219	27.73		
2q22A	139	27.95		
1rgs	288	28.29		
1jdc	429	29.50		
1ne6A	283	29.53	b.82.3.2,b.82.3.2	91831,91832
1ad4A	266	33.73	c.1.21.1	29670
2bj7A	138	37.51	a.43.1.3,d.58.18.4	128608,128609
1bplB	294	38.08	b.71.1.1	27716
1rl3A	288	38.58	b.82.3.2,b.82.3.2	104975,104976
1aoiB	87	42.70	a.22.1.1	16470
1vp6A	138	42.87	b.82.3.2	113939
2aibA	98	43.60	a.134.1.1	126824
2iojA	139	44.32		
1sxjC	340	44.47	a.80.1.1,c.37.1.20	106085,106086
1nu5A	370	45.10	c.1.11.2,d.54.1.1	92183,92184
1oaaA	259	45.87	c.2.1.2	29829
1yzqA	170	46.27	c.37.1.8	124286
2zl4A	196	48.40		
1o6eA	235	49.21	b.57.1.1	81083
1qguA	478	50.12	c.92.2.3	35625
1x54A	434	52.08		
2cbyA	208	54.30	c.14.1.1	130202
1cnoA	87	55.35	a.3.1.1	15814
2d93A	134	55.67		
1qq7A	253	58.90	c.108.1.1	43329
2qf7A	1165	59.94		
1t07A	94	61.56	d.279.1.1	106196
1e29A	135	61.73	a.3.1.1	59161
1jdcA	429	61.97	b.71.1.1,c.1.8.1	27789,28776
1d2kA	392	64.74	c.1.8.5,d.26.3.1	29008,38442
1oixA	191	66.47	c.37.1.8	118710
1e1oA	504	67.68	b.40.4.1,d.104.1.1	25258,40714
1siqA	392	67.97	a.29.3.1,e.6.1.1	105585,105586
1g3nC	257	68.40	a.74.1.1,a.74.1.1	18366,18367
8rucI	123	69.76	d.73.1.1	39629
2jg9C	131	71.11		
1tbbA	332	77.58	a.211.1.2	106741
2hueC	84	78.34	a.22.1.1	136776
2guyA	478	79.47	b.71.1.1,c.1.8.1	135754,135755
1lylA	504	79.53	b.40.4.1,d.104.1.1	25261,40717
2fvhA	120	79.61		
1kpeA	126	79.64	d.13.1.1	37508
1gdvA	85	80.80	a.3.1.1	60458
1knqA	175	81.74	c.37.1.17	72786
1amy	403	81.95		
2oocA	113	83.55		
2qneA	495	84.78		
1cx4A	305	87.24	b.82.3.2,b.82.3.2	59099,59100