# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e62A 61 3.011 1siqA 392 3.640 a.29.3.1,e.6.1.1 105585,105586 1jqoA 970 3.787 c.1.12.3 77160 2om6A 235 4.190 1e7wA 291 4.211 c.2.1.2 59373 1jdcA 429 5.546 b.71.1.1,c.1.8.1 27789,28776 1gcyA 527 6.437 b.71.1.1,c.1.8.1 27788,28775 1jdc 429 6.627 2ef0A 301 6.688 2dg1A 333 6.756 b.68.6.1 131493 1g3nC 257 6.787 a.74.1.1,a.74.1.1 18366,18367 3b96A 587 8.588 1ad1A 266 9.764 c.1.21.1 29668 3bc9A 599 9.863 1u7eB 154 12.82 1w63A 618 13.01 i.23.1.1 109192 2fstX 367 13.13 2z69A 154 13.32 3cq5A 369 14.31 1ayl 541 14.36 1e4eA 343 14.42 c.30.1.2,d.142.1.1 59221,59222 2at2A 300 14.48 c.78.1.1,c.78.1.1 35196,35197 2qniA 219 16.98 2ef5A 290 17.55 1c3pA 375 17.65 c.42.1.2 32606 1eyeA 280 18.40 c.1.21.1 29672 1hniA 558 18.70 c.55.3.1,e.8.1.2 33586,43044 2os5A 119 19.35 2vosA 487 19.52 1aogA 485 19.93 c.3.1.5,c.3.1.5,d.87.1.1 30517,30518,40190 1ortA 335 22.14 c.78.1.1,c.78.1.1 35204,35205 1g33A 73 22.64 a.39.1.4 65121 2gduA 504 23.52 b.71.1.1,c.1.8.1 135032,135033 2q22A 139 25.39 1g0uG 252 27.73 d.153.1.4 41952 2vpkA 116 28.99 1jeqA 609 29.25 a.140.2.1,b.131.1.1,c.62.1.3 64748,90366,90367 2pqqA 149 29.30 1amy 403 29.61 1jv1A 505 31.58 c.68.1.5 71892 1ne6A 283 32.26 b.82.3.2,b.82.3.2 91831,91832 2q4aA 330 32.44 b.82.2.8 139839 2ptzA 432 32.61 1xdpA 687 32.76 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 1lylA 504 33.02 b.40.4.1,d.104.1.1 25261,40717 3c0bA 334 33.58 1akaA 401 33.71 c.67.1.1 34258 1oaaA 259 34.22 c.2.1.2 29829 2iu5A 195 34.34 2h0qA 261 35.06 2etxA 209 35.26 1o4sA 389 36.15 c.67.1.1 86620 2f2bA 246 36.78 2uxwA 607 37.86 1r7aA 504 38.97 b.71.1.1,c.1.8.1 97192,97193 1jr3A 373 40.74 a.80.1.1,c.37.1.20 63245,63246 1v33A 366 41.41 d.264.1.1 100278 7aatA 401 42.98 c.67.1.1 34250 1ve3A 227 43.25 c.66.1.43 120010 2bfwA 200 44.05 c.87.1.8 128456 1f4qA 165 44.42 a.39.1.8 17360 2aibA 98 44.89 a.134.1.1 126824 1knqA 175 46.63 c.37.1.17 72786 1db1A 259 46.75 a.123.1.1 19329 2ek0A 90 46.79 1ugpA 203 47.06 d.149.1.1 107831 2cbyA 208 47.15 c.14.1.1 130202 2zc8A 369 47.89 1f3lA 321 48.61 c.66.1.6 59630 1h4pA 408 48.88 c.1.8.3 90617 1afwA 393 49.17 c.95.1.1,c.95.1.1 35900,35901 1pc3A 350 50.67 c.94.1.1 104102 1ds1A 324 51.52 b.82.2.2 28127 1rl3A 288 52.92 b.82.3.2,b.82.3.2 104975,104976 1jakA 512 53.08 c.1.8.6,d.92.2.1 66472,66473 1vp6A 138 53.62 b.82.3.2 113939 1ie9A 259 53.64 a.123.1.1 62318 2opoA 86 53.75 a.39.1.10 139209 2jj7A 186 55.14 2ousA 331 55.28 1t07A 94 55.85 d.279.1.1 106196 1wf3A 301 56.00 c.37.1.8,d.52.3.1 114574,114575 1go3F 107 56.61 a.60.8.2 65407 1jlvA 209 57.68 a.45.1.1,c.47.1.5 71729,71730 2b0uC 288 58.44 2fvhA 120 60.61 1otjA 283 60.92 b.82.2.5 93517 1q6aA 107 63.01 a.186.1.1 95966 3c2uA 538 63.24 1hkkA 364 64.22 c.1.8.5,d.26.3.1 90634,90635 1xovA 326 64.41 b.34.11.4,c.56.5.6 122206,122207 1gvnB 287 64.92 c.37.1.21 76354 1qq7A 253 65.43 c.108.1.1 43329 1f82A 424 65.52 d.92.1.7 40307 1rylA 167 65.84 d.276.1.1 105124 1pq4A 291 66.19 c.92.2.2 94995 2vhhA 405 67.58 1wb0A 445 69.67 c.1.8.5,d.26.3.1 120825,120826 2q83A 346 70.20 1kutA 230 71.15 d.143.1.1 73017 2v3vA 723 71.62 1ht6A 405 71.79 b.71.1.1,c.1.8.1 83629,83630 1u02A 239 72.26 c.108.1.15 107538 1aoiB 87 73.28 a.22.1.1 16470 1ef1A 294 73.43 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 2oocA 113 75.11 3cz8A 319 76.69 1ofgA 381 76.93 c.2.1.3,d.81.1.5 30064,39979 1h7wA 1025 77.13 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2hw2A 143 77.17 1avaA 403 77.50 b.71.1.1,c.1.8.1 27797,28784 1cnoA 87 78.69 a.3.1.1 15814 2eceA 462 79.97 1v4pA 157 80.11 d.67.1.2 113533 1moqA 368 80.42 c.80.1.1 35302 1e29A 135 81.20 a.3.1.1 59161 1c28A 135 82.55 b.22.1.1 23857 1z2zA 446 83.27 2bv6A 142 83.32 1tbbA 332 83.75 a.211.1.2 106741 2rn2 155 84.08 1v93A 296 84.26 c.1.23.1 100532 1dj0A 264 84.83 d.265.1.1 90337 1lc5A 364 86.92 c.67.1.1 73827 1rkpA 326 88.42 a.211.1.2 97620 2d93A 134 88.61 3c4zA 543 89.86