# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1otjA	283	2.829	b.82.2.5	93517
1ayl	541	3.935		
2e62A	61	4.050		
1jayA	212	6.892	c.2.1.6	66478
1u7eB	154	12.06		
2z69A	154	12.19		
1oaaA	259	17.89	c.2.1.2	29829
2pqqA	149	19.09		
2gauA	232	20.02	a.4.5.4,b.82.3.2	134894,134895
1o7fA	469	20.09	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
2os5A	119	20.32		
2pl5A	366	20.68		
1zybA	232	20.84	a.4.5.4,b.82.3.2	125815,125816
2q22A	139	21.60		
1jdc	429	22.43		
1rgs	288	23.34		
1ne6A	283	23.55	b.82.3.2,b.82.3.2	91831,91832
2qniA	219	26.29		
1nu5A	370	26.41	c.1.11.2,d.54.1.1	92183,92184
1t07A	94	33.37	d.279.1.1	106196
1rl3A	288	33.44	b.82.3.2,b.82.3.2	104975,104976
2zl4A	196	34.59		
2bj7A	138	34.71	a.43.1.3,d.58.18.4	128608,128609
1aoiB	87	35.85	a.22.1.1	16470
2cbyA	208	35.91	c.14.1.1	130202
1cnoA	87	36.08	a.3.1.1	15814
1bplB	294	36.28	b.71.1.1	27716
2aibA	98	38.45	a.134.1.1	126824
1o6eA	235	39.96	b.57.1.1	81083
1jdcA	429	45.82	b.71.1.1,c.1.8.1	27789,28776
2iojA	139	46.47		
1x54A	434	46.83		
1sxjC	340	46.91	a.80.1.1,c.37.1.20	106085,106086
1vp6A	138	47.20	b.82.3.2	113939
1yzqA	170	48.79	c.37.1.8	124286
1ad4A	266	49.43	c.1.21.1	29670
1e1oA	504	53.48	b.40.4.1,d.104.1.1	25258,40714
2d93A	134	57.73		
1d2kA	392	59.39	c.1.8.5,d.26.3.1	29008,38442
2guyA	478	60.59	b.71.1.1,c.1.8.1	135754,135755
1rylA	167	61.24	d.276.1.1	105124
1e29A	135	62.84	a.3.1.1	59161
2ebnA	289	65.04	c.1.8.5	28990
1qguA	478	65.99	c.92.2.3	35625
2qf7A	1165	66.23		
1lylA	504	67.57	b.40.4.1,d.104.1.1	25261,40717
2hueC	84	68.06	a.22.1.1	136776
1tbbA	332	70.27	a.211.1.2	106741
8rucI	123	72.12	d.73.1.1	39629
1g3nC	257	73.08	a.74.1.1,a.74.1.1	18366,18367
1cx4A	305	73.16	b.82.3.2,b.82.3.2	59099,59100
2jg9C	131	73.16		
1qq7A	253	73.59	c.108.1.1	43329
1gdvA	85	74.82	a.3.1.1	60458
2aaaA	484	76.45	b.71.1.1,c.1.8.1	27777,28764
1eovA	487	78.44	b.40.4.1,d.104.1.1	25239,40760
1rkpA	326	78.89	a.211.1.2	97620
119l	164	79.49		
1siqA	392	79.57	a.29.3.1,e.6.1.1	105585,105586
3bc9A	599	79.79		
1oixA	191	80.40	c.37.1.8	118710
1rlrA	761	81.75	a.98.1.1,c.7.1.2	18753,30679
2oocA	113	83.79		
1amy	403	84.02		
1b8aA	438	85.30	b.40.4.1,d.104.1.1	25244,40765
2om6A	235	85.60		
2yvuA	186	85.72		
2z1qA	577	86.92		
2pceA	386	88.19		
1lc5A	364	89.03	c.67.1.1	73827
2qneA	495	89.09