# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1otjA	283	2.441	b.82.2.5	93517
2e62A	61	3.109		
1ayl	541	3.821		
1jayA	212	6.595	c.2.1.6	66478
1jdc	429	16.44		
1zybA	232	16.59	a.4.5.4,b.82.3.2	125815,125816
1u7eB	154	19.46		
2z69A	154	21.61		
2qniA	219	24.09		
2aibA	98	24.09	a.134.1.1	126824
1o7fA	469	24.86	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
1rl3A	288	25.05	b.82.3.2,b.82.3.2	104975,104976
2q22A	139	26.06		
2os5A	119	27.17		
1o6eA	235	31.54	b.57.1.1	81083
3bjoA	103	32.32		
2pl5A	366	32.83		
1sxjC	340	34.61	a.80.1.1,c.37.1.20	106085,106086
2pqqA	149	35.35		
1f3lA	321	36.87	c.66.1.6	59630
1nu5A	370	39.71	c.1.11.2,d.54.1.1	92183,92184
1ne6A	283	41.59	b.82.3.2,b.82.3.2	91831,91832
2bj7A	138	41.83	a.43.1.3,d.58.18.4	128608,128609
2d93A	134	43.02		
1nuiA	255	47.65	e.13.1.2,g.41.3.2	86194,86195
2posA	94	47.66		
1j0mA	752	51.07	a.102.3.2,b.24.1.1,b.30.5.2	83910,83911,83912
1cnoA	87	51.30	a.3.1.1	15814
1oaaA	259	53.24	c.2.1.2	29829
2zl4A	196	55.18		
2oocA	113	56.04		
2gauA	232	56.19	a.4.5.4,b.82.3.2	134894,134895
1tqnA	486	56.91	a.104.1.1	107238
1gdvA	85	58.25	a.3.1.1	60458
1jdcA	429	59.19	b.71.1.1,c.1.8.1	27789,28776
1qguA	478	59.77	c.92.2.3	35625
2jg9C	131	63.46		
1hx0A	496	69.28	b.71.1.1,c.1.8.1	61346,61347
1rlrA	761	70.65	a.98.1.1,c.7.1.2	18753,30679
1xzoA	174	71.92	c.47.1.10	122474
1t07A	94	71.96	d.279.1.1	106196
2guyA	478	72.81	b.71.1.1,c.1.8.1	135754,135755
1ad4A	266	74.19	c.1.21.1	29670
1ars	396	79.76		
1aoiB	87	80.46	a.22.1.1	16470
1tbbA	332	81.37	a.211.1.2	106741
1bplB	294	81.40	b.71.1.1	27716
3bc9A	599	82.09		
1amy	403	83.61		
1kpeA	126	83.86	d.13.1.1	37508
1v74B	87	87.00	a.24.20.1	100443
1cyj	90	87.75		
3cjhB	64	89.39		
1e43A	483	89.69	b.71.1.1,c.1.8.1	59217,59218
2iojA	139	89.95