# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e62A 61 1.270 1otjA 283 2.433 b.82.2.5 93517 1ayl 541 4.372 1u7eB 154 5.564 1jayA 212 6.216 c.2.1.6 66478 1zybA 232 7.921 a.4.5.4,b.82.3.2 125815,125816 2z69A 154 9.576 1o7fA 469 12.74 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1o6eA 235 15.00 b.57.1.1 81083 2q22A 139 16.75 1rl3A 288 17.36 b.82.3.2,b.82.3.2 104975,104976 1ne6A 283 17.43 b.82.3.2,b.82.3.2 91831,91832 2d93A 134 17.90 2qniA 219 18.90 1sxjC 340 19.17 a.80.1.1,c.37.1.20 106085,106086 2os5A 119 20.06 2gauA 232 21.92 a.4.5.4,b.82.3.2 134894,134895 2pqqA 149 23.41 1vp6A 138 24.00 b.82.3.2 113939 2aibA 98 25.04 a.134.1.1 126824 1nu5A 370 26.19 c.1.11.2,d.54.1.1 92183,92184 2guyA 478 29.36 b.71.1.1,c.1.8.1 135754,135755 1rgs 288 31.82 2posA 94 35.61 1nuiA 255 35.68 e.13.1.2,g.41.3.2 86194,86195 2pl5A 366 36.48 1bplB 294 37.81 b.71.1.1 27716 1j0mA 752 43.63 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 1in4A 334 45.00 a.4.5.11,c.37.1.20 62597,62598 1rylA 167 45.85 d.276.1.1 105124 1rlrA 761 46.22 a.98.1.1,c.7.1.2 18753,30679 1jdc 429 47.48 1kpeA 126 47.91 d.13.1.1 37508 2iojA 139 48.11 1ea9C 583 49.56 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2bj7A 138 51.65 a.43.1.3,d.58.18.4 128608,128609 2jg9C 131 51.99 1go3F 107 53.87 a.60.8.2 65407 2zl4A 196 54.23 2fvhA 120 54.29 1knqA 175 55.40 c.37.1.17 72786 1eyqA 222 59.27 d.36.1.1 38534 3cjhB 64 62.23 1aoiB 87 62.43 a.22.1.1 16470 1in6A 334 62.79 a.4.5.11,c.37.1.20 62601,62602 1wv9A 94 63.52 1zz1A 369 63.76 2oocA 113 65.27 1t07A 94 65.41 d.279.1.1 106196 2ebnA 289 67.39 c.1.8.5 28990 2aaaA 484 68.70 b.71.1.1,c.1.8.1 27777,28764 1g3nC 257 71.78 a.74.1.1,a.74.1.1 18366,18367 1bgf 124 75.52 1siqA 392 75.85 a.29.3.1,e.6.1.1 105585,105586 8rucI 123 76.84 d.73.1.1 39629 1fgkA 310 77.81 d.144.1.7 41693 1oaaA 259 77.83 c.2.1.2 29829 1wzaA 488 78.89 b.71.1.1,c.1.8.1 121489,121490 1m7xA 617 81.17 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2d7lA 81 81.99 2hueC 84 81.99 a.22.1.1 136776 1drmA 131 82.92 d.110.3.2 40908 1qq7A 253 83.03 c.108.1.1 43329 1h3gA 601 83.59 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1lufA 343 84.05 d.144.1.7 78223 1cnoA 87 88.46 a.3.1.1 15814