# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1j0mA	752	12.43	a.102.3.2,b.24.1.1,b.30.5.2	83910,83911,83912
1rgs	288	14.52		
1ayl	541	16.99		
1zybA	232	19.39	a.4.5.4,b.82.3.2	125815,125816
2os5A	119	19.42		
1rl3A	288	20.48	b.82.3.2,b.82.3.2	104975,104976
1u7eB	154	30.01		
2z69A	154	39.75		
2q22A	139	44.65		
2idgA	175	45.67		
3b64A	112	48.42		
1otjA	283	50.06	b.82.2.5	93517
3c4zA	543	50.90		
3bjoA	103	52.03		
1vp6A	138	54.98	b.82.3.2	113939
1cx4A	305	56.71	b.82.3.2,b.82.3.2	59099,59100
1o7fA	469	57.58	a.4.5.31,b.82.3.2,b.82.3.2	81131,81132,81133
2pqqA	149	61.23		
1tz9A	367	63.61	c.1.15.6	107466
2d93A	134	69.37		
2guyA	478	71.65	b.71.1.1,c.1.8.1	135754,135755
1ylhA	560	72.02		
2gauA	232	72.20	a.4.5.4,b.82.3.2	134894,134895
2f9fA	177	73.38	c.87.1.8	133161
1p5dX	463	78.86	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	94138,94139,94140,94141