# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ayl	541	7.122		
1jdc	429	8.544		
1nu5A	370	16.04	c.1.11.2,d.54.1.1	92183,92184
2q22A	139	16.50		
1lylA	504	16.65	b.40.4.1,d.104.1.1	25261,40717
1e1oA	504	17.30	b.40.4.1,d.104.1.1	25258,40714
1zybA	232	18.06	a.4.5.4,b.82.3.2	125815,125816
2z69A	154	18.87		
2os5A	119	19.03		
1j0mA	752	19.96	a.102.3.2,b.24.1.1,b.30.5.2	83910,83911,83912
1otjA	283	20.82	b.82.2.5	93517
1jdcA	429	28.19	b.71.1.1,c.1.8.1	27789,28776
1o6eA	235	28.42	b.57.1.1	81083
1u7eB	154	28.43		
1dceB	331	32.79	a.102.4.3	18872
2qniA	219	39.87		
1ars	396	39.89		
1rgs	288	44.77		
2d93A	134	46.12		
2fmyA	220	48.21		
3bjoA	103	49.40		
1rl3A	288	49.70	b.82.3.2,b.82.3.2	104975,104976
1fyhB	229	52.73	b.1.2.1,b.1.2.1	22055,22056
2oocA	113	54.79		
1bplB	294	60.77	b.71.1.1	27716
8rucI	123	60.90	d.73.1.1	39629
2ghsA	326	61.48	b.68.6.1	135209
2guyA	478	65.82	b.71.1.1,c.1.8.1	135754,135755
1vp6A	138	68.14	b.82.3.2	113939
2pqqA	149	68.64		
1nuiA	255	69.25	e.13.1.2,g.41.3.2	86194,86195
1fl1A	230	69.60	b.57.1.1	27023
1tqnA	486	71.38	a.104.1.1	107238
1hp1A	516	75.73	d.114.1.1,d.159.1.2	70976,70977
2aaaA	484	77.80	b.71.1.1,c.1.8.1	27777,28764
1v4pA	157	79.15	d.67.1.2	113533
1cx4A	305	81.63	b.82.3.2,b.82.3.2	59099,59100
1ur5A	309	84.69	c.2.1.5,d.162.1.1	99807,99808
1v7oA	165	85.87	d.67.1.2	100480
1t07A	94	87.02	d.279.1.1	106196
1jlvA	209	87.56	a.45.1.1,c.47.1.5	71729,71730
1uxjA	309	87.71	c.2.1.5,d.162.1.1	108112,108113
1cnoA	87	88.33	a.3.1.1	15814
3b64A	112	89.48