# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	1.676		
1zp2A	235	5.280		
2q22A	139	5.595		
1ctjA	89	8.125	a.3.1.1	15798
2aiuA	105	12.86		
3bc9A	599	15.01		
2f2cA	254	18.78	a.74.1.1,a.74.1.1	132805,132806
1jhgA	101	19.15	a.4.12.1	19009
1ccrA	111	21.37	a.3.1.1	15877
2os5A	119	22.47		
1ycc	108	25.72		
3ct2A	382	28.96		
1wv9A	94	29.10		
1hroA	106	31.19	a.3.1.1	15897
2jcdA	345	31.90		
2sasA	185	32.56	a.39.1.5	17258
2ig8A	144	34.20		
3chhA	336	34.46		
2b9wA	424	35.45		
2v0uA	146	36.10		
1ew0A	130	37.04	d.110.3.2	40905
1yccA	108	37.68	a.3.1.1	15834
1qn2A	100	39.75	a.3.1.1	15882
1yoeA	322	40.22		
1ayl	541	40.82		
1dunA	134	40.87	b.85.4.1	28371
1eg7A	557	42.41	c.37.1.10	32241
1uw0A	117	42.64	g.39.1.12	108063
1jdcA	429	43.14	b.71.1.1,c.1.8.1	27789,28776
2i9fA	69	44.33		
1ht6A	405	44.95	b.71.1.1,c.1.8.1	83629,83630
1e43A	483	46.50	b.71.1.1,c.1.8.1	59217,59218
1jdc	429	46.99		
1gcyA	527	47.45	b.71.1.1,c.1.8.1	27788,28775
2qg8A	163	47.65		
2zceA	291	50.12		
1h32B	138	51.29	a.3.1.1	76620
2hmcA	344	51.90		
2ol1A	147	53.60		
2aaaA	484	54.81	b.71.1.1,c.1.8.1	27777,28764
7taa	478	55.10		
1x54A	434	55.12		
2acmA	66	56.18		
1gdvA	85	57.83	a.3.1.1	60458
1fcyA	236	58.44	a.123.1.1	19282
1u7eB	154	60.01		
3lzt	129	61.19		
1l0wA	580	62.84	b.40.4.1,d.74.4.1,d.104.1.1	73426,73427,73428
1d3cA	686	62.91	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21827,22496,27734,28721
3cjhB	64	63.26		
2arcA	164	65.62	b.82.4.1	28148
3bmvA	683	66.64		
1pieA	419	66.83	d.14.1.5,d.58.26.7	94706,94707
1qzzA	374	67.02	a.4.5.29,c.66.1.12	96719,96720
1g94A	448	70.33	b.71.1.1,c.1.8.1	65169,65170
2hfsA	332	71.14		
1v9yA	167	73.24	d.110.3.2	108454
2bj7A	138	75.59	a.43.1.3,d.58.18.4	128608,128609
1r7aA	504	76.76	b.71.1.1,c.1.8.1	97192,97193
2guyA	478	77.42	b.71.1.1,c.1.8.1	135754,135755
1z7aA	308	78.47	c.6.2.6	124591
1t07A	94	80.25	d.279.1.1	106196
2hpkA	208	80.32		
1xtpA	254	80.82	c.66.1.42	116031
1yw4A	341	81.10	c.56.5.7	124131
1hx0A	496	83.28	b.71.1.1,c.1.8.1	61346,61347
2z69A	154	89.87