# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e62A 61 0.6422 2q22A 139 2.313 1ew0A 130 3.410 d.110.3.2 40905 1zp2A 235 4.220 3cjhB 64 7.769 2os5A 119 7.927 1ayl 541 8.118 2v0uA 146 8.339 2sasA 185 8.445 a.39.1.5 17258 3bc9A 599 8.635 1v9yA 167 9.912 d.110.3.2 108454 2aiuA 105 11.82 1wv9A 94 13.10 2acmA 66 14.69 2ywwA 149 14.93 1jhgA 101 15.54 a.4.12.1 19009 1ctjA 89 16.42 a.3.1.1 15798 2b02A 119 17.03 2f2cA 254 17.41 a.74.1.1,a.74.1.1 132805,132806 2hmcA 344 18.03 7taa 478 19.21 3lzt 129 19.24 1ccrA 111 19.50 a.3.1.1 15877 2guyA 478 20.50 b.71.1.1,c.1.8.1 135754,135755 1ycc 108 21.02 1r7aA 504 22.86 b.71.1.1,c.1.8.1 97192,97193 1x0oA 119 23.69 2i9fA 69 26.39 2b9sB 62 27.89 1dunA 134 28.94 b.85.4.1 28371 2aaaA 484 30.26 b.71.1.1,c.1.8.1 27777,28764 2iojA 139 30.94 1pieA 419 31.46 d.14.1.5,d.58.26.7 94706,94707 1hfoA 113 31.86 d.80.1.3 61006 2fvhA 120 32.29 1f5qB 252 32.55 a.74.1.1,a.74.1.1 18362,18363 3b64A 112 32.71 1t07A 94 33.04 d.279.1.1 106196 1e43A 483 34.59 b.71.1.1,c.1.8.1 59217,59218 2gb4A 252 35.04 1ht6A 405 35.83 b.71.1.1,c.1.8.1 83629,83630 1uw0A 117 37.68 g.39.1.12 108063 1eg7A 557 37.84 c.37.1.10 32241 1qn2A 100 38.91 a.3.1.1 15882 1yccA 108 39.42 a.3.1.1 15834 2bzgA 232 40.01 c.66.1.36 129559 1u7eB 154 40.52 1hroA 106 40.60 a.3.1.1 15897 2ccmA 191 40.74 2g8lA 299 41.20 e.50.1.1 134775 1mz4A 137 41.36 a.3.1.1 91496 1h32B 138 42.15 a.3.1.1 76620 1qzzA 374 42.49 a.4.5.29,c.66.1.12 96719,96720 1j3bA 529 42.58 c.91.1.1,c.109.1.1 77071,77072 2zfdA 226 43.67 2ig8A 144 44.89 1f74A 293 48.25 c.1.10.1 29079 2airB 153 48.75 d.58.2.1,g.41.7.1 126832,126833 1ii2A 524 51.23 c.91.1.1,c.109.1.1 66146,66147 1jaeA 471 52.01 b.71.1.1,c.1.8.1 27773,28760 1n9lA 109 52.02 d.110.3.6 85468 1xj4A 119 52.47 d.110.3.2 122027 2qniA 219 54.88 1uxjA 309 55.24 c.2.1.5,d.162.1.1 108112,108113 1jdc 429 55.77 1hx0A 496 56.55 b.71.1.1,c.1.8.1 61346,61347 2z69A 154 57.47 1jdcA 429 58.54 b.71.1.1,c.1.8.1 27789,28776 1t15A 214 59.12 c.15.1.3,c.15.1.3 99067,99068 2pqqA 149 59.96 1gdvA 85 60.07 a.3.1.1 60458 2j3xA 431 61.85 1nx8A 273 63.08 b.82.2.8 86374 1xtpA 254 63.08 c.66.1.42 116031 1vdhA 249 63.15 d.58.4.10 108523 1dt1A 129 63.66 a.3.1.1 15811 2j7tA 302 63.98 1ylhA 560 66.00 2gduA 504 66.22 b.71.1.1,c.1.8.1 135032,135033 4ubpA 101 68.79 d.8.1.1 37352 1sseB 86 69.63 1j0hA 588 71.11 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2nteA 210 71.58 2dbnA 461 74.91 2a40B 260 77.78 d.151.1.1 126139 2hpkA 208 78.17 1y23A 145 79.30 d.13.1.1 116394 2cujA 108 79.54 a.4.1.18 130812 1wdcC 156 80.33 a.39.1.5 17317 1sauA 115 80.53 2couA 109 81.17 1g94A 448 81.72 b.71.1.1,c.1.8.1 65169,65170 1njgA 250 82.90 c.37.1.20 85785 2nwdX 130 84.32 d.2.1.2 138718 1d3cA 686 84.91 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1yqfA 203 86.59 d.25.1.1 123880 2d0sA 79 86.64 1m15A 357 87.18 a.83.1.1,d.128.1.2 78368,78369 2cz2A 223 88.31 2pr5A 132 89.06 2bhuA 602 89.34 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556