# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	1.374		
1ctjA	89	8.771	a.3.1.1	15798
2q22A	139	15.16		
2os5A	119	19.55		
3ct2A	382	22.22		
1zp2A	235	22.39		
1dunA	134	22.96	b.85.4.1	28371
1jhgA	101	29.06	a.4.12.1	19009
2ol1A	147	29.29		
2jcdA	345	30.07		
1f6yA	262	32.68	c.1.21.2	29673
2aiuA	105	32.95		
3b64A	112	35.22		
2b9wA	424	35.64		
3chhA	336	37.79		
3bc9A	599	38.97		
1fcyA	236	39.48	a.123.1.1	19282
1jdcA	429	41.34	b.71.1.1,c.1.8.1	27789,28776
1jdc	429	43.58		
1ccrA	111	44.98	a.3.1.1	15877
2hmcA	344	46.67		
1yoeA	322	50.35		
1ycc	108	50.57		
2f2cA	254	51.41	a.74.1.1,a.74.1.1	132805,132806
1wv9A	94	51.60		
1gdvA	85	52.73	a.3.1.1	60458
2qniA	219	55.80		
1izmA	184	59.36	a.199.1.1	90725
2arcA	164	64.25	b.82.4.1	28148
1ctj	89	64.94		
1ht6A	405	65.56	b.71.1.1,c.1.8.1	83629,83630
7taa	478	66.13		
3lzt	129	66.16		
3cjhB	64	66.87		
1ew0A	130	68.43	d.110.3.2	40905
1t07A	94	69.01	d.279.1.1	106196
1yccA	108	69.18	a.3.1.1	15834
1v37A	177	70.34	c.60.1.1	113497
1z7aA	308	73.37	c.6.2.6	124591
3bjuA	521	75.46		
1gcyA	527	75.49	b.71.1.1,c.1.8.1	27788,28775
1d3cA	686	78.68	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21827,22496,27734,28721
2z5bA	151	81.63		
1e43A	483	82.19	b.71.1.1,c.1.8.1	59217,59218
2cbyA	208	83.80	c.14.1.1	130202
1z3aA	168	84.88	c.97.1.2	124396
2v0uA	146	85.41		
2zceA	291	85.57		
2iojA	139	85.79		
1bli	483	86.15		
2g8lA	299	87.13	e.50.1.1	134775
2aaaA	484	87.30	b.71.1.1,c.1.8.1	27777,28764