# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	2.307		
1ctjA	89	7.942	a.3.1.1	15798
2os5A	119	14.94		
2q22A	139	16.80		
1zp2A	235	21.12		
3ct2A	382	24.56		
1dunA	134	28.57	b.85.4.1	28371
3b64A	112	29.74		
2ol1A	147	31.02		
2b9wA	424	32.54		
2aiuA	105	32.67		
1fcyA	236	33.36	a.123.1.1	19282
1jhgA	101	33.90	a.4.12.1	19009
1gdvA	85	35.01	a.3.1.1	60458
2f2cA	254	45.23	a.74.1.1,a.74.1.1	132805,132806
2qniA	219	47.25		
1jdc	429	47.82		
1wv9A	94	48.92		
1ctj	89	49.58		
3bc9A	599	52.50		
2hmcA	344	52.64		
1ccrA	111	53.11	a.3.1.1	15877
1izmA	184	54.70	a.199.1.1	90725
1jdcA	429	56.74	b.71.1.1,c.1.8.1	27789,28776
2jcdA	345	57.33		
1ycc	108	58.42		
2gdgA	114	60.56	d.80.1.3	135015
3lzt	129	64.49		
1pk6A	133	66.38	b.22.1.1	94801
1yoeA	322	67.43		
1f6yA	262	69.15	c.1.21.2	29673
2iojA	139	70.56		
1t07A	94	74.45	d.279.1.1	106196
1gcyA	527	75.86	b.71.1.1,c.1.8.1	27788,28775
3cjhB	64	76.45		
1ew0A	130	77.34	d.110.3.2	40905
2j7yA	255	77.40	a.123.1.1	138130
1z7aA	308	78.28	c.6.2.6	124591
1ht6A	405	79.23	b.71.1.1,c.1.8.1	83629,83630
2acmA	66	79.45		
1yccA	108	79.45	a.3.1.1	15834
2zceA	291	79.46		
3chhA	336	81.14		
7taa	478	81.39		
1ls9A	91	81.57	a.3.1.1	78177
1amfA	233	81.88	c.94.1.1	35833
1cnoA	87	82.35	a.3.1.1	15814
1v37A	177	83.60	c.60.1.1	113497
1z3aA	168	86.12	c.97.1.2	124396
2erwA	56	87.72		
2z5bA	151	87.72		
2v0uA	146	88.48		
1ayl	541	88.83