# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gcyA 527 0.8088 b.71.1.1,c.1.8.1 27788,28775 2v3vA 723 0.8197 1jdcA 429 0.8898 b.71.1.1,c.1.8.1 27789,28776 2e62A 61 1.988 1r7aA 504 2.424 b.71.1.1,c.1.8.1 97192,97193 1f6yA 262 3.111 c.1.21.2 29673 1z15A 344 3.224 2ef0A 301 3.593 1jdc 429 4.182 2puzA 419 4.524 2gduA 504 5.584 b.71.1.1,c.1.8.1 135032,135033 1siqA 392 6.102 a.29.3.1,e.6.1.1 105585,105586 1ctjA 89 6.341 a.3.1.1 15798 2vn4A 599 6.432 1moqA 368 6.505 c.80.1.1 35302 2zc8A 369 7.076 2q22A 139 7.087 1zp2A 235 7.257 3bc9A 599 9.644 1eexB 224 10.93 c.51.3.1 33213 1ie9A 259 10.94 a.123.1.1 62318 2ef5A 290 12.46 1obrA 326 13.14 c.56.5.2 33828 1jhgA 101 14.38 a.4.12.1 19009 2sasA 185 14.52 a.39.1.5 17258 1ayl 541 15.20 2pi6A 361 16.36 1wb0A 445 17.23 c.1.8.5,d.26.3.1 120825,120826 2aiuA 105 17.54 2gxaA 274 20.98 2os5A 119 22.50 2ap1A 327 22.68 c.55.1.10,c.55.1.10 127108,127109 1sh0A 510 25.96 e.8.1.4 98876 1p32A 209 26.84 d.25.1.1 38379 2qvpA 275 27.11 2g3fA 421 27.16 1c3pA 375 28.31 c.42.1.2 32606 2r3sA 335 29.20 2bmbA 545 29.97 1hroA 106 30.60 a.3.1.1 15897 1hqvA 191 30.97 a.39.1.8 61160 1bif 469 31.89 2d0iA 333 32.49 2bghA 421 32.50 1jv1A 505 33.40 c.68.1.5 71892 2pnkA 428 33.91 1l5oA 356 33.91 c.39.1.1 77711 1pvdA 537 34.00 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2q4gW 461 36.15 c.10.1.1 139849 3b96A 587 36.21 1jlvA 209 36.61 a.45.1.1,c.47.1.5 71729,71730 2arcA 164 37.58 b.82.4.1 28148 2q4aA 330 39.35 b.82.2.8 139839 1ctj 89 40.62 1vf8A 377 40.82 c.1.8.5,d.26.3.1 120029,120030 1quuA 250 41.15 a.7.1.1,a.7.1.1 16320,16321 1e6wA 260 41.15 c.2.1.2 59326 2aaxA 275 42.24 2a0mA 316 42.41 c.42.1.1 125960 3crrA 323 43.24 1wdcC 156 43.27 a.39.1.5 17317 1x19A 359 43.74 2hoeA 380 43.97 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3b64A 112 44.84 2vglS 142 47.44 1vkmA 297 47.60 c.138.1.1 108670 1ht6A 405 47.79 b.71.1.1,c.1.8.1 83629,83630 1cnoA 87 48.08 a.3.1.1 15814 2jgqA 233 48.28 1go3F 107 48.33 a.60.8.2 65407 1z5rA 306 49.19 c.56.5.1 124488 2p8bA 369 49.22 1t5jA 313 49.79 a.209.1.1 99125 2of7A 260 50.36 2zadA 345 50.90 2iojA 139 51.33 1pgtA 210 51.47 a.45.1.1,c.47.1.5 17515,32809 1ve3A 227 52.05 c.66.1.43 120010 1s9pA 227 52.32 a.123.1.1 105384 7aatA 401 53.00 c.67.1.1 34250 3ci0K 298 53.88 2iu5A 195 54.60 1atgA 231 54.64 c.94.1.1 35834 1u8vA 490 54.72 a.29.3.1,e.6.1.1 113196,113197 1ycc 108 55.28 1v2aA 210 55.60 a.45.1.1,c.47.1.5 100263,100264 2jfkA 433 56.77 1fecA 490 57.53 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2ptzA 432 59.49 3dhpA 496 61.70 1qn2A 100 63.45 a.3.1.1 15882 1qzzA 374 63.59 a.4.5.29,c.66.1.12 96719,96720 1ew0A 130 63.98 d.110.3.2 40905 2rhkA 140 64.51 3cjhB 64 64.78 1ua7A 422 65.46 b.71.1.1,c.1.8.1 107759,107760 1gdvA 85 66.66 a.3.1.1 60458 1xcrA 316 67.63 d.290.1.2 121860 2iv2X 715 68.29 b.52.2.2,c.81.1.1 137714,137715 1e0tA 470 69.66 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1musA 477 69.94 c.55.3.4 79494 2r78A 117 70.23 2qniA 219 72.83 2gb4A 252 74.29 1satA 471 75.68 b.80.7.1,d.92.1.6 28014,40300 1kutA 230 76.21 d.143.1.1 73017 2uxwA 607 77.50 2hpkA 208 77.63 2cbyA 208 77.81 c.14.1.1 130202 2ip2A 334 78.71 1x54A 434 78.71 2bfwA 200 79.68 c.87.1.8 128456 1ycoA 279 80.11 2zceA 291 80.61 1t07A 94 81.19 d.279.1.1 106196 1he1A 135 81.38 a.24.11.1 16641 1sf8A 126 81.50 d.271.1.1 105472 1tkiA 321 81.84 d.144.1.7 41638 1ov2A 99 82.00 a.13.1.1 93580 1wv9A 94 82.73 2cb0A 333 83.87 2z3tA 425 85.45 1whsA 255 85.87 c.69.1.5 34649 1smd 496 86.67 2zc0A 407 88.20 1gefA 123 88.25 c.52.1.18 60465 1rh9A 373 88.35 c.1.8.3 118773 2bdgA 223 88.62 1mz4A 137 88.65 a.3.1.1 91496