# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e62A 61 1.306 1zp2A 235 4.890 2q22A 139 5.663 3bc9A 599 8.456 1ctjA 89 8.992 a.3.1.1 15798 2aiuA 105 11.59 1jdcA 429 13.57 b.71.1.1,c.1.8.1 27789,28776 1ayl 541 14.60 3ct2A 382 15.42 1jhgA 101 18.27 a.4.12.1 19009 2os5A 119 19.16 1ccrA 111 21.97 a.3.1.1 15877 1jdc 429 23.28 7taa 478 23.92 1dunA 134 24.18 b.85.4.1 28371 1z7aA 308 24.50 c.6.2.6 124591 1hroA 106 26.47 a.3.1.1 15897 2b9wA 424 26.68 3bjuA 521 26.81 2guyA 478 27.32 b.71.1.1,c.1.8.1 135754,135755 1ycc 108 28.59 1e43A 483 31.27 b.71.1.1,c.1.8.1 59217,59218 2arcA 164 31.47 b.82.4.1 28148 1gcyA 527 31.86 b.71.1.1,c.1.8.1 27788,28775 2f2cA 254 32.07 a.74.1.1,a.74.1.1 132805,132806 1h32B 138 33.18 a.3.1.1 76620 1qn2A 100 35.80 a.3.1.1 15882 2aaaA 484 37.37 b.71.1.1,c.1.8.1 27777,28764 2iojA 139 37.43 3bmvA 683 37.70 2ol1A 147 40.85 2v0uA 146 41.69 1t07A 94 42.47 d.279.1.1 106196 2zceA 291 43.66 1bli 483 44.44 2hmcA 344 45.65 1eg7A 557 47.72 c.37.1.10 32241 1cnoA 87 47.93 a.3.1.1 15814 2gxaA 274 48.65 1ht6A 405 48.98 b.71.1.1,c.1.8.1 83629,83630 1x54A 434 49.22 1g94A 448 50.22 b.71.1.1,c.1.8.1 65169,65170 1r7aA 504 51.90 b.71.1.1,c.1.8.1 97192,97193 1d3cA 686 52.48 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1yoeA 322 53.25 1gdvA 85 55.81 a.3.1.1 60458 2i9fA 69 57.87 2bhuA 602 58.59 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 3cjhB 64 58.85 2g8lA 299 61.21 e.50.1.1 134775 3lzt 129 61.23 1ew0A 130 61.81 d.110.3.2 40905 2acmA 66 62.24 1j0hA 588 65.10 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1qzzA 374 65.79 a.4.5.29,c.66.1.12 96719,96720 1f6yA 262 66.14 c.1.21.2 29673 3b64A 112 67.20 2bj7A 138 67.27 a.43.1.3,d.58.18.4 128608,128609 1xdzA 240 68.55 c.66.1.20 115196 1ii2A 524 68.69 c.91.1.1,c.109.1.1 66146,66147 1jpdX 324 69.39 c.1.11.2,d.54.1.1 67014,67015 2gduA 504 70.00 b.71.1.1,c.1.8.1 135032,135033 2z5bA 151 70.33 1ylhA 560 71.16 1rl3A 288 73.56 b.82.3.2,b.82.3.2 104975,104976 1f74A 293 73.78 c.1.10.1 29079 3chhA 336 74.60 1l0wA 580 75.24 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1u7eB 154 78.87 2pqqA 149 81.40 1gefA 123 81.43 c.52.1.18 60465 1sauA 115 85.00 1jaeA 471 85.02 b.71.1.1,c.1.8.1 27773,28760 1siqA 392 86.79 a.29.3.1,e.6.1.1 105585,105586 1pk6A 133 88.17 b.22.1.1 94801