# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	3.035		
1zp2A	235	7.389		
2q22A	139	11.13		
2aiuA	105	14.13		
3bc9A	599	16.50		
1ctjA	89	19.09	a.3.1.1	15798
2os5A	119	21.25		
3cjhB	64	21.42		
2ol1A	147	21.69		
1dunA	134	21.89	b.85.4.1	28371
1ew0A	130	26.47	d.110.3.2	40905
2acmA	66	37.14		
1ccrA	111	38.18	a.3.1.1	15877
1ycc	108	38.86		
3lzt	129	45.24		
7taa	478	45.55		
2iojA	139	46.67		
1ayl	541	46.92		
1jhgA	101	48.39	a.4.12.1	19009
1jdcA	429	49.11	b.71.1.1,c.1.8.1	27789,28776
2f2cA	254	49.48	a.74.1.1,a.74.1.1	132805,132806
1jdc	429	51.34		
1yoeA	322	51.65		
1e43A	483	52.03	b.71.1.1,c.1.8.1	59217,59218
1wv9A	94	52.59		
1hroA	106	53.29	a.3.1.1	15897
1t07A	94	54.21	d.279.1.1	106196
1yccA	108	55.60	a.3.1.1	15834
2aaaA	484	56.64	b.71.1.1,c.1.8.1	27777,28764
2v0uA	146	56.87		
1qn2A	100	57.63	a.3.1.1	15882
2guyA	478	60.07	b.71.1.1,c.1.8.1	135754,135755
2b9wA	424	62.77		
1r7aA	504	64.24	b.71.1.1,c.1.8.1	97192,97193
3ct2A	382	67.26		
2hmcA	344	68.78		
1ht6A	405	69.55	b.71.1.1,c.1.8.1	83629,83630
1hfoA	113	72.81	d.80.1.3	61006
2sasA	185	73.49	a.39.1.5	17258
1eg7A	557	75.30	c.37.1.10	32241
1f5qB	252	78.06	a.74.1.1,a.74.1.1	18362,18363
2gduA	504	81.07	b.71.1.1,c.1.8.1	135032,135033
3b64A	112	82.21		
1v9yA	167	82.52	d.110.3.2	108454
2b02A	119	83.11		
1gcyA	527	83.28	b.71.1.1,c.1.8.1	27788,28775
2gb4A	252	83.69		
3bjuA	521	84.10		
2hfsA	332	84.74		
2arcA	164	86.92	b.82.4.1	28148
1f6yA	262	88.27	c.1.21.2	29673
1gdvA	85	89.43	a.3.1.1	60458
1u7eB	154	89.61