# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2q22A	139	2.763		
3bjuA	521	11.64		
1ctjA	89	15.66	a.3.1.1	15798
2ol1A	147	19.52		
1jdcA	429	20.54	b.71.1.1,c.1.8.1	27789,28776
1dunA	134	23.17	b.85.4.1	28371
2qg8A	163	25.52		
1ctj	89	37.66		
2gxaA	274	38.01		
2g8lA	299	38.54	e.50.1.1	134775
3bc9A	599	39.24		
1jaeA	471	41.16	b.71.1.1,c.1.8.1	27773,28760
1ayl	541	41.79		
3ct2A	382	42.37		
2os5A	119	43.57		
2b9wA	424	44.05		
7taa	478	45.76		
2f2cA	254	50.23	a.74.1.1,a.74.1.1	132805,132806
3b64A	112	52.85		
2qxxA	190	55.83		
2d93A	134	58.60		
1e43A	483	58.99	b.71.1.1,c.1.8.1	59217,59218
1gcyA	527	61.61	b.71.1.1,c.1.8.1	27788,28775
3cjhB	64	67.33		
2yzjA	169	71.73		
1ht6A	405	75.09	b.71.1.1,c.1.8.1	83629,83630
1euwA	152	76.81	b.85.4.1	28349
1gdvA	85	77.66	a.3.1.1	60458
2guyA	478	78.77	b.71.1.1,c.1.8.1	135754,135755
2cujA	108	80.74	a.4.1.18	130812
2gdgA	114	82.40	d.80.1.3	135015
1u7eB	154	87.66		
2z69A	154	88.67