# List of top-scoring protein chains for T0489.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1pk1A	89	8.482	a.60.1.2	118711
1a28A	256	18.24	a.123.1.1	19290
1e3kA	258	18.49	a.123.1.1	59193
1sr7A	259	18.63	a.123.1.1	105957
1sqnA	261	18.77	a.123.1.1	105944
1xa6A	466	22.70	a.116.1.1,d.93.1.1,g.49.1.1	115030,115031,115032
2cxxA	190	33.13	c.37.1.8	131013
2qhpA	296	45.68		
1kw4A	89	54.04	a.60.1.2	73077
3b9gA	328	61.02		
1r4fA	339	61.80	c.70.1.1	96994
1hozA	339	62.50	c.70.1.1	65898
1bq7A	189	62.81	c.47.1.13	90331
1kicA	339	63.95	c.70.1.1	72510
1w3eX	101	64.25		
1w41A	101	80.83		
1w40A	101	81.31		
1h7mA	102	83.53	d.79.3.1	83485
1w42A	101	83.62		
2hpkA	208	88.39