# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	3.179		
2gdrA	202	3.242		
2uz8A	174	5.865		
1jdc	429	6.088		
2q22A	139	8.697		
2aiuA	105	14.02		
2cz2A	223	15.03		
2ntoA	201	20.48		
1jdcA	429	21.46	b.71.1.1,c.1.8.1	27789,28776
1wpoA	256	25.55	b.57.1.1	27012
1v2aA	210	27.06	a.45.1.1,c.47.1.5	100263,100264
1jlvA	209	27.59	a.45.1.1,c.47.1.5	71729,71730
1dunA	134	28.40	b.85.4.1	28371
2b0zB	108	29.22		
2b10B	108	29.35		
1n2aA	201	32.23	a.45.1.1,c.47.1.5	91553,91554
1gdvA	85	34.29	a.3.1.1	60458
1a0fA	201	35.00	a.45.1.1,c.47.1.5	17737,33031
1ctjA	89	35.09	a.3.1.1	15798
1ht6A	405	38.86	b.71.1.1,c.1.8.1	83629,83630
2b12B	108	40.03		
2pt5A	168	41.70		
1njgA	250	43.62	c.37.1.20	85785
1e43A	483	44.13	b.71.1.1,c.1.8.1	59217,59218
2b11B	108	48.44		
1otjA	283	49.20	b.82.2.5	93517
1eg7A	557	49.35	c.37.1.10	32241
1yccA	108	49.51	a.3.1.1	15834
1jlwA	219	51.18	a.45.1.1,c.47.1.5	71741,71742
1e29A	135	52.05	a.3.1.1	59161
1u7eB	154	52.91		
1qn2A	100	53.06	a.3.1.1	15882
2i9fA	69	54.76		
1ew0A	130	55.81	d.110.3.2	40905
3ct2A	382	57.98		
1ccrA	111	58.04	a.3.1.1	15877
1zgyA	272	58.13	a.123.1.1	125064
1v9yA	167	60.27	d.110.3.2	108454
2hnlA	225	60.60		
2acmA	66	64.45		
1hroA	106	69.11	a.3.1.1	15897
1jnuA	104	70.07	d.110.3.6	71762
2pqqA	149	71.12		
1wzlA	585	71.14	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1t07A	94	71.67	d.279.1.1	106196
3cjhB	64	73.57		
2hmcA	344	74.47		
1dd9A	338	77.33	e.13.1.1	43254
2pvqA	201	77.53		
2ig8A	144	79.53		
1ejxA	100	79.97	d.8.1.1	83182
1gcyA	527	82.17	b.71.1.1,c.1.8.1	27788,28775
2bj7A	138	83.28	a.43.1.3,d.58.18.4	128608,128609