# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2uz8A 174 1.739 2e62A 61 1.946 2gdrA 202 3.142 1jdc 429 5.086 2q22A 139 7.323 2aiuA 105 12.80 2cz2A 223 15.64 1jdcA 429 16.31 b.71.1.1,c.1.8.1 27789,28776 2pt5A 168 17.44 1gdvA 85 17.64 a.3.1.1 60458 3cjhB 64 22.60 1ctjA 89 22.70 a.3.1.1 15798 1ew0A 130 25.89 d.110.3.2 40905 1v2aA 210 27.05 a.45.1.1,c.47.1.5 100263,100264 1zgyA 272 30.81 a.123.1.1 125064 1a0fA 201 31.01 a.45.1.1,c.47.1.5 17737,33031 1n2aA 201 31.80 a.45.1.1,c.47.1.5 91553,91554 2b0zB 108 34.40 2b10B 108 37.05 1jnuA 104 38.65 d.110.3.6 71762 1v9yA 167 38.81 d.110.3.2 108454 1kagA 173 38.95 c.37.1.2 72249 2b12B 108 39.15 2ntoA 201 39.33 1pzlA 237 40.56 a.123.1.1 104393 2hnlA 225 42.42 1m7xA 617 42.47 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2b02A 119 42.51 1jlvA 209 44.88 a.45.1.1,c.47.1.5 71729,71730 1ovlA 271 47.88 a.123.1.1 87455 1xpcA 248 48.52 a.123.1.1 115738 1ht6A 405 49.60 b.71.1.1,c.1.8.1 83629,83630 1fipA 98 49.92 a.4.1.12 18980 1dunA 134 50.35 b.85.4.1 28371 2acmA 66 50.54 1yccA 108 52.76 a.3.1.1 15834 1wpoA 256 56.10 b.57.1.1 27012 1jlwA 219 56.31 a.45.1.1,c.47.1.5 71741,71742 2b11B 108 56.55 1qn2A 100 57.84 a.3.1.1 15882 1t07A 94 58.83 d.279.1.1 106196 1eg7A 557 59.55 c.37.1.10 32241 1njgA 250 60.48 c.37.1.20 85785 3ertA 261 60.89 a.123.1.1 19292 1vqoD 177 60.93 d.77.1.1 120365 1e29A 135 61.02 a.3.1.1 59161 1qkmA 255 61.39 a.123.1.1 19309 3inkC 133 61.43 a.26.1.2 16881 2pqqA 149 61.94 1ccrA 111 63.17 a.3.1.1 15877 1g2nA 264 64.54 a.123.1.1 60227 1n83A 270 68.24 a.123.1.1 80276 2ig8A 144 68.48 1xj4A 119 68.78 d.110.3.2 122027 1u7eB 154 70.45 17gsA 210 71.15 a.45.1.1,c.47.1.5 17524,32818 2i9fA 69 71.21 1jbwA 428 71.44 c.59.1.2,c.72.2.2 62860,62861 1pq9A 253 74.86 a.123.1.1 95004 1pk5A 248 75.00 a.123.1.1 88139 1ctj 89 77.57 1nhyA 219 80.90 a.45.1.1,c.47.1.5 80520,80521 2gpuA 230 81.25 a.123.1.1 135493 1n46A 258 82.04 a.123.1.1 85315 1otjA 283 82.75 b.82.2.5 93517 2bj7A 138 83.26 a.43.1.3,d.58.18.4 128608,128609 3ct2A 382 83.45 1fcyA 236 83.45 a.123.1.1 19282 1sseB 86 84.16 3bsoA 510 84.23 1wzlA 585 85.28 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1hroA 106 87.41 a.3.1.1 15897 1upvA 257 87.78 a.123.1.1 113398 2i7vA 459 89.92