# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e62A 61 2.124 2gdrA 202 2.621 1jdc 429 4.083 2q22A 139 4.723 2cz2A 223 4.877 1wpoA 256 6.792 b.57.1.1 27012 1kagA 173 6.829 c.37.1.2 72249 2uz8A 174 6.992 1ew0A 130 7.313 d.110.3.2 40905 1njgA 250 9.354 c.37.1.20 85785 1v9yA 167 9.833 d.110.3.2 108454 3cjhB 64 11.30 1jdcA 429 11.82 b.71.1.1,c.1.8.1 27789,28776 1fipA 98 15.39 a.4.1.12 18980 1e29A 135 17.43 a.3.1.1 59161 2aiuA 105 20.80 2b10B 108 21.56 2b0zB 108 21.65 2acmA 66 21.79 2b02A 119 23.80 1sseB 86 25.11 1u7eB 154 25.44 1jnuA 104 25.69 d.110.3.6 71762 1ctjA 89 27.02 a.3.1.1 15798 2hnlA 225 27.06 1jlwA 219 27.70 a.45.1.1,c.47.1.5 71741,71742 2ntoA 201 30.22 1jlvA 209 30.50 a.45.1.1,c.47.1.5 71729,71730 2os5A 119 31.77 4ubpA 101 32.15 d.8.1.1 37352 2ywwA 149 32.25 1gdvA 85 32.99 a.3.1.1 60458 1a0fA 201 33.99 a.45.1.1,c.47.1.5 17737,33031 1e43A 483 34.10 b.71.1.1,c.1.8.1 59217,59218 1zgyA 272 35.58 a.123.1.1 125064 2b11B 108 36.07 1ht6A 405 36.62 b.71.1.1,c.1.8.1 83629,83630 2chgA 226 37.58 1eg7A 557 37.88 c.37.1.10 32241 2pqqA 149 38.55 1ejxA 100 38.64 d.8.1.1 83182 2fvhA 120 40.10 2i9fA 69 40.19 2ebn 289 40.52 2pt5A 168 41.14 1wv9A 94 43.84 2q4gW 461 45.01 c.10.1.1 139849 1jbwA 428 46.19 c.59.1.2,c.72.2.2 62860,62861 1x0oA 119 46.28 1n2aA 201 46.67 a.45.1.1,c.47.1.5 91553,91554 2vkpA 109 47.87 2o0mA 345 48.17 2b9sB 62 49.05 3ct2A 382 49.11 1hfoA 113 49.96 d.80.1.3 61006 1v2aA 210 51.37 a.45.1.1,c.47.1.5 100263,100264 1dv2A 452 51.84 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 3b64A 112 51.89 1f2eA 201 52.23 a.45.1.1,c.47.1.5 17745,33039 2b12B 108 52.49 1t07A 94 53.92 d.279.1.1 106196 1otjA 283 54.48 b.82.2.5 93517 2g8lA 299 56.54 e.50.1.1 134775 2hmcA 344 57.75 2ig8A 144 58.58 1gd0A 122 59.90 d.80.1.3 39834 1yccA 108 60.04 a.3.1.1 15834 1vqoD 177 61.69 d.77.1.1 120365 1miwA 404 61.99 a.173.1.1,d.218.1.4 79162,79163 2airB 153 62.18 d.58.2.1,g.41.7.1 126832,126833 2fuqA 747 63.82 17gsA 210 64.10 a.45.1.1,c.47.1.5 17524,32818 1fw1A 216 65.49 a.45.1.1,c.47.1.5 60051,60052 1guqA 348 66.59 d.13.1.2,d.13.1.2 37522,37523 2couA 109 69.27 3b9eA 584 69.60 1rroA 108 71.03 a.39.1.4 17195 1ccrA 111 71.56 a.3.1.1 15877 1j3bA 529 71.76 c.91.1.1,c.109.1.1 77071,77072 1vrpA 381 72.08 a.83.1.1,d.128.1.2 120473,120474 2rkhA 180 73.08 1ux8A 132 75.27 a.1.1.1 113449 2i7vA 459 76.30 3bpvA 138 77.44 1smd 496 80.08 1zybA 232 80.85 a.4.5.4,b.82.3.2 125815,125816 1gs5A 258 82.41 c.73.1.2 70395 1hx0A 496 84.17 b.71.1.1,c.1.8.1 61346,61347 2e50A 225 85.98 1xj4A 119 86.51 d.110.3.2 122027 2q81A 119 87.26 1pzlA 237 89.18 a.123.1.1 104393