# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	1.972		
1jdc	429	7.984		
2uz8A	174	8.140		
2gdrA	202	10.11		
1ctjA	89	20.97	a.3.1.1	15798
1jdcA	429	21.34	b.71.1.1,c.1.8.1	27789,28776
2q22A	139	29.44		
1gdvA	85	32.64	a.3.1.1	60458
1dunA	134	35.78	b.85.4.1	28371
1njgA	250	38.27	c.37.1.20	85785
1mdlA	359	42.35	c.1.11.2,d.54.1.1	29247,38891
3b64A	112	42.89		
2pt5A	168	43.37		
3ct2A	382	43.90		
2i7vA	459	46.28		
2aiuA	105	46.82		
2cz2A	223	47.16		
2b10B	108	49.02		
2b0zB	108	52.03		
1zgyA	272	52.66	a.123.1.1	125064
1t07A	94	53.19	d.279.1.1	106196
1jbwA	428	54.10	c.59.1.2,c.72.2.2	62860,62861
1nrlA	316	54.37	a.123.1.1	92091
1fipA	98	55.20	a.4.1.12	18980
2os5A	119	57.58		
1ctj	89	59.00		
2ntoA	201	59.69		
1e43A	483	61.09	b.71.1.1,c.1.8.1	59217,59218
1wzlA	585	61.18	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1ht6A	405	61.24	b.71.1.1,c.1.8.1	83629,83630
1jlvA	209	61.30	a.45.1.1,c.47.1.5	71729,71730
1vqoD	177	63.39	d.77.1.1	120365
1pk5A	248	69.73	a.123.1.1	88139
2b12B	108	70.52		
1kagA	173	70.60	c.37.1.2	72249
1g2nA	264	72.09	a.123.1.1	60227
2hmcA	344	74.35		
1fcyA	236	74.52	a.123.1.1	19282
1n2aA	201	74.65	a.45.1.1,c.47.1.5	91553,91554
3bsoA	510	74.93		
3cjhB	64	76.59		
1a0fA	201	78.22	a.45.1.1,c.47.1.5	17737,33031
1eg7A	557	79.46	c.37.1.10	32241
1ew0A	130	82.11	d.110.3.2	40905
1n46A	258	84.34	a.123.1.1	85315
4ubpA	101	84.38	d.8.1.1	37352
1gd0A	122	85.28	d.80.1.3	39834
1dd9A	338	89.91	e.13.1.1	43254