# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	1.381		
2gdrA	202	2.339		
1jdc	429	3.583		
2uz8A	174	5.072		
1jdcA	429	9.490	b.71.1.1,c.1.8.1	27789,28776
1v2aA	210	9.884	a.45.1.1,c.47.1.5	100263,100264
2q22A	139	10.51		
2cz2A	223	13.74		
1n2aA	201	14.62	a.45.1.1,c.47.1.5	91553,91554
2aiuA	105	16.62		
1dunA	134	17.13	b.85.4.1	28371
1jlvA	209	17.28	a.45.1.1,c.47.1.5	71729,71730
1jlwA	219	18.18	a.45.1.1,c.47.1.5	71741,71742
1wpoA	256	20.44	b.57.1.1	27012
3ct2A	382	22.09		
1a0fA	201	25.28	a.45.1.1,c.47.1.5	17737,33031
1wzlA	585	27.07	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
2b0zB	108	30.55		
2b10B	108	31.87		
2ntoA	201	33.23		
1e43A	483	35.14	b.71.1.1,c.1.8.1	59217,59218
1ctjA	89	35.26	a.3.1.1	15798
1ht6A	405	36.48	b.71.1.1,c.1.8.1	83629,83630
1gdvA	85	37.03	a.3.1.1	60458
1f2eA	201	39.35	a.45.1.1,c.47.1.5	17745,33039
17gsA	210	40.64	a.45.1.1,c.47.1.5	17524,32818
1njgA	250	41.65	c.37.1.20	85785
2iojA	139	43.01		
2hnlA	225	47.46		
1g2nA	264	49.48	a.123.1.1	60227
2pt5A	168	50.77		
2b12B	108	52.33		
1dd9A	338	52.45	e.13.1.1	43254
2b11B	108	53.52		
2pqqA	149	55.87		
1qn2A	100	60.42	a.3.1.1	15882
3cjhB	64	62.89		
1ejxA	100	63.06	d.8.1.1	83182
1yccA	108	63.14	a.3.1.1	15834
2i9fA	69	63.18		
1ccrA	111	63.67	a.3.1.1	15877
2acmA	66	65.82		
1eg7A	557	65.98	c.37.1.10	32241
1jnuA	104	68.58	d.110.3.6	71762
1nhyA	219	68.63	a.45.1.1,c.47.1.5	80520,80521
2ol1A	147	68.68		
2ayuA	417	69.32	d.305.1.1	127571
1zgyA	272	69.47	a.123.1.1	125064
1e29A	135	70.96	a.3.1.1	59161
2q09A	416	72.24		
1ux8A	132	72.92	a.1.1.1	113449
2jg9C	131	74.99		
1hroA	106	75.01	a.3.1.1	15897
3dhzA	329	75.73		
1ew0A	130	78.42	d.110.3.2	40905
1kagA	173	78.50	c.37.1.2	72249
1otjA	283	78.66	b.82.2.5	93517
1j0hA	588	80.98	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
1u7eB	154	81.18		
2bj7A	138	81.30	a.43.1.3,d.58.18.4	128608,128609
4ubpA	101	83.40	d.8.1.1	37352
2ebn	289	84.45		
1pzlA	237	86.44	a.123.1.1	104393
1jbwA	428	87.56	c.59.1.2,c.72.2.2	62860,62861
1fipA	98	89.92	a.4.1.12	18980