# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jdcA 429 0.5297 b.71.1.1,c.1.8.1 27789,28776 1jdc 429 0.7243 2uz8A 174 1.854 1satA 471 2.490 b.80.7.1,d.92.1.6 28014,40300 1v2aA 210 2.542 a.45.1.1,c.47.1.5 100263,100264 1pgtA 210 2.643 a.45.1.1,c.47.1.5 17515,32809 17gsA 210 3.047 a.45.1.1,c.47.1.5 17524,32818 2e62A 61 3.429 1gcyA 527 3.795 b.71.1.1,c.1.8.1 27788,28775 2ch5A 347 3.822 c.55.1.5,c.55.1.5 130453,130454 2ip2A 334 3.913 1n2aA 201 4.928 a.45.1.1,c.47.1.5 91553,91554 2ef0A 301 4.994 2v3vA 723 5.117 1jlvA 209 7.270 a.45.1.1,c.47.1.5 71729,71730 2cz2A 223 7.275 1bag 425 7.651 2aaxA 275 7.675 1s9pA 227 9.695 a.123.1.1 105384 1u1jA 765 9.858 c.1.22.2,c.1.22.2 107590,107591 1jakA 512 10.12 c.1.8.6,d.92.2.1 66472,66473 2ef5A 290 10.55 1y8qA 346 10.80 2q22A 139 12.19 2jgqA 233 15.32 1el4A 195 16.67 a.39.1.5 59453 1z15A 344 19.67 1o4sA 389 21.41 c.67.1.1 86620 1r7aA 504 23.02 b.71.1.1,c.1.8.1 97192,97193 1xcrA 316 23.07 d.290.1.2 121860 1siqA 392 23.47 a.29.3.1,e.6.1.1 105585,105586 1uhnA 189 24.31 a.39.1.5 99399 1vjpA 394 24.96 c.2.1.3,d.81.1.3 100828,100829 2g3fA 421 25.54 1db1A 259 25.78 a.123.1.1 19329 1ie9A 259 25.89 a.123.1.1 62318 1t7rA 269 26.28 a.123.1.1 106635 2puzA 419 26.33 2aiuA 105 26.34 1hkkA 364 28.42 c.1.8.5,d.26.3.1 90634,90635 2b10B 108 30.02 1e6wA 260 30.26 c.2.1.2 59326 2vl7A 540 30.53 1lylA 504 31.20 b.40.4.1,d.104.1.1 25261,40717 1ctjA 89 32.51 a.3.1.1 15798 1mxgA 435 32.72 b.71.1.1,c.1.8.1 85193,85194 1hjxA 362 33.30 c.1.8.5,d.26.3.1 83512,83513 2zc8A 369 33.30 1sat 471 33.33 1avaA 403 33.40 b.71.1.1,c.1.8.1 27797,28784 2pvqA 201 33.79 2ap1A 327 35.49 c.55.1.10,c.55.1.10 127108,127109 3bc9A 599 36.24 1n46A 258 36.64 a.123.1.1 85315 3inkC 133 37.45 a.26.1.2 16881 3crrA 323 37.57 1owqA 361 38.39 c.1.8.5,d.26.3.1 104041,104042 1c3hA 137 38.55 b.22.1.1 90405 1ugpA 203 40.08 d.149.1.1 107831 1e7wA 291 40.17 c.2.1.2 59373 1l5oA 356 40.34 c.39.1.1 77711 1gdvA 85 41.48 a.3.1.1 60458 1oihA 301 41.52 b.82.2.5 93051 2hnlA 225 41.73 1fipA 98 42.96 a.4.1.12 18980 2sasA 185 43.76 a.39.1.5 17258 2rdxA 379 43.91 1g0uG 252 47.68 d.153.1.4 41952 2fd5A 180 47.75 a.4.1.9,a.121.1.1 133291,133292 1ht6A 405 49.25 b.71.1.1,c.1.8.1 83629,83630 1njgA 250 49.53 c.37.1.20 85785 2bhuA 602 50.10 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 1o7nB 194 50.90 d.17.4.4 81164 2b0zB 108 52.05 2r3sA 335 53.67 1ab4 477 54.03 1jnuA 104 54.10 d.110.3.6 71762 2e50A 225 54.26 1eg9B 194 54.48 d.17.4.4 38120 1x6vA 630 55.62 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2jj7A 186 56.64 3cqyA 370 57.06 1kagA 173 57.31 c.37.1.2 72249 3dni 260 57.74 2dkaA 544 58.28 2fcwA 109 58.42 a.13.1.1 133288 2o9cA 342 58.82 1e4eA 343 58.90 c.30.1.2,d.142.1.1 59221,59222 2ax6A 256 58.95 a.123.1.1 127479 1jlwA 219 59.37 a.45.1.1,c.47.1.5 71741,71742 2ax9A 256 59.99 a.123.1.1 127481 2b11B 108 60.38 2qkoA 215 63.14 1ireA 204 63.74 d.149.1.1 76769 2pqqA 149 66.02 3b64A 112 67.80 2iidA 498 68.16 c.3.1.2,d.16.1.5 137426,137427 2p8bA 369 70.08 2fphX 165 70.13 1yloA 348 71.61 b.49.3.1,c.56.5.4 123659,123660 1z2zA 446 72.65 1sh0A 510 72.77 e.8.1.4 98876 1jq5A 370 72.89 e.22.1.2 67084 2b12B 108 73.53 1hroA 106 73.80 a.3.1.1 15897 1wb0A 445 74.63 c.1.8.5,d.26.3.1 120825,120826 2os5A 119 74.80 2q4aA 330 76.86 b.82.2.8 139839 3cjhB 64 77.33 2gduA 504 78.55 b.71.1.1,c.1.8.1 135032,135033 1iyeA 309 79.93 e.17.1.1 83786 2ctc 307 80.49 1xpcA 248 80.63 a.123.1.1 115738 2fug1 438 82.69 1jr7A 311 83.27 b.82.2.3 63255 3c61A 314 83.91 1pvdA 537 84.15 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2o0mA 345 84.81 2gakA 391 84.88 2dwcA 433 84.89 1kutA 230 85.68 d.143.1.1 73017 1pq9A 253 87.68 a.123.1.1 95004 1c2pA 576 87.94 e.8.1.4 43117