# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	1.202		
1jdc	429	2.212		
2gdrA	202	3.405		
2uz8A	174	4.547		
1jdcA	429	5.598	b.71.1.1,c.1.8.1	27789,28776
3ct2A	382	10.82		
2q22A	139	12.78		
1v2aA	210	12.93	a.45.1.1,c.47.1.5	100263,100264
2aiuA	105	14.69		
2cz2A	223	15.94		
1jlvA	209	17.45	a.45.1.1,c.47.1.5	71729,71730
1wzlA	585	18.73	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1jlwA	219	20.26	a.45.1.1,c.47.1.5	71741,71742
1n2aA	201	20.44	a.45.1.1,c.47.1.5	91553,91554
1wpoA	256	22.93	b.57.1.1	27012
1ctjA	89	23.34	a.3.1.1	15798
1ht6A	405	26.77	b.71.1.1,c.1.8.1	83629,83630
2b0zB	108	27.25		
2b10B	108	27.95		
1e43A	483	29.00	b.71.1.1,c.1.8.1	59217,59218
1gdvA	85	29.69	a.3.1.1	60458
1a0fA	201	31.15	a.45.1.1,c.47.1.5	17737,33031
1dunA	134	33.51	b.85.4.1	28371
1njgA	250	35.65	c.37.1.20	85785
2iojA	139	38.79		
2pt5A	168	40.02		
1g2nA	264	41.83	a.123.1.1	60227
2b12B	108	42.21		
2q09A	416	42.40		
1mdlA	359	42.41	c.1.11.2,d.54.1.1	29247,38891
2ntoA	201	46.64		
1qn2A	100	48.90	a.3.1.1	15882
2b11B	108	50.49		
1yccA	108	54.13	a.3.1.1	15834
2pqqA	149	54.77		
2hnlA	225	55.04		
17gsA	210	55.70	a.45.1.1,c.47.1.5	17524,32818
1ux8A	132	56.81	a.1.1.1	113449
3cjhB	64	60.87		
1jnuA	104	62.76	d.110.3.6	71762
1ccrA	111	64.16	a.3.1.1	15877
1kagA	173	64.24	c.37.1.2	72249
1gcyA	527	64.57	b.71.1.1,c.1.8.1	27788,28775
2os5A	119	65.24		
1f2eA	201	66.00	a.45.1.1,c.47.1.5	17745,33039
2i7vA	459	66.16		
1hroA	106	66.87	a.3.1.1	15897
1ew0A	130	68.16	d.110.3.2	40905
1e29A	135	68.19	a.3.1.1	59161
1eg7A	557	68.21	c.37.1.10	32241
2ebn	289	68.40		
3b64A	112	68.75		
2z5bA	151	69.23		
1nrlA	316	73.80	a.123.1.1	92091
1pzlA	237	75.59	a.123.1.1	104393
1ejxA	100	75.77	d.8.1.1	83182
2i9fA	69	75.86		
2hmcA	344	77.22		
4ubpA	101	77.38	d.8.1.1	37352
1ctj	89	77.39		
1jbwA	428	78.72	c.59.1.2,c.72.2.2	62860,62861
1fipA	98	81.35	a.4.1.12	18980
1pamA	686	81.37	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21846,22515,27753,28740
1pk5A	248	85.91	a.123.1.1	88139
3dhzA	329	86.99		
1j0hA	588	87.49	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
1qo7A	394	87.70	c.69.1.11	34697
1h32A	261	88.19	a.3.1.8,a.3.1.8	76618,76619
1v9yA	167	88.34	d.110.3.2	108454
2acmA	66	89.14