# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2uz8A	174	2.284		
2e62A	61	2.860		
2gdrA	202	4.698		
1jdc	429	5.225		
1kagA	173	8.764	c.37.1.2	72249
2pt5A	168	9.244		
1dunA	134	11.41	b.85.4.1	28371
2q22A	139	13.54		
1jdcA	429	13.56	b.71.1.1,c.1.8.1	27789,28776
1gdvA	85	19.59	a.3.1.1	60458
2aiuA	105	22.91		
3cjhB	64	25.50		
1ctjA	89	30.08	a.3.1.1	15798
1vqoD	177	31.65	d.77.1.1	120365
1v2aA	210	31.92	a.45.1.1,c.47.1.5	100263,100264
2cz2A	223	33.30		
1jlvA	209	34.96	a.45.1.1,c.47.1.5	71729,71730
1e43A	483	39.16	b.71.1.1,c.1.8.1	59217,59218
2ntoA	201	41.97		
1ht6A	405	43.73	b.71.1.1,c.1.8.1	83629,83630
1a0fA	201	43.92	a.45.1.1,c.47.1.5	17737,33031
1n2aA	201	45.06	a.45.1.1,c.47.1.5	91553,91554
2b0zB	108	47.82		
2yzjA	169	51.79		
2ol1A	147	55.78		
2acmA	66	57.03		
1wpoA	256	57.88	b.57.1.1	27012
2b10B	108	58.70		
1ew0A	130	59.09	d.110.3.2	40905
2iojA	139	62.07		
2e50A	225	63.44		
1wzlA	585	63.47	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
2b12B	108	63.82		
1zgyA	272	64.23	a.123.1.1	125064
1jlwA	219	67.15	a.45.1.1,c.47.1.5	71741,71742
2hnlA	225	70.51		
2i7vA	459	71.40		
1m7xA	617	73.34	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
1yccA	108	74.13	a.3.1.1	15834
2q09A	416	78.94		
1h32A	261	83.26	a.3.1.8,a.3.1.8	76618,76619
1t07A	94	84.91	d.279.1.1	106196
2b11B	108	89.79