# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	2.427		
2uz8A	174	4.376		
2gdrA	202	7.205		
1jdc	429	7.713		
1kagA	173	9.718	c.37.1.2	72249
1dunA	134	9.938	b.85.4.1	28371
2q22A	139	12.66		
2cz2A	223	15.17		
3cjhB	64	19.41		
2aiuA	105	22.13		
2pt5A	168	24.16		
1jdcA	429	28.00	b.71.1.1,c.1.8.1	27789,28776
1v2aA	210	28.03	a.45.1.1,c.47.1.5	100263,100264
1ht6A	405	33.53	b.71.1.1,c.1.8.1	83629,83630
2iojA	139	36.95		
2b0zB	108	41.21		
1e43A	483	42.45	b.71.1.1,c.1.8.1	59217,59218
1ew0A	130	42.75	d.110.3.2	40905
2acmA	66	42.85		
1ctjA	89	43.97	a.3.1.1	15798
2ntoA	201	50.37		
1gdvA	85	50.78	a.3.1.1	60458
1njgA	250	51.02	c.37.1.20	85785
2ol1A	147	52.39		
1fipA	98	53.22	a.4.1.12	18980
1v9yA	167	53.67	d.110.3.2	108454
1yccA	108	54.34	a.3.1.1	15834
1vqoD	177	54.44	d.77.1.1	120365
1wpoA	256	55.63	b.57.1.1	27012
2b10B	108	57.09		
2b12B	108	58.70		
2q09A	416	60.15		
1j0hA	588	60.39	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
1m7xA	617	62.31	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
1ccrA	111	63.06	a.3.1.1	15877
1e29A	135	67.37	a.3.1.1	59161
1n2aA	201	67.99	a.45.1.1,c.47.1.5	91553,91554
1t07A	94	73.00	d.279.1.1	106196
1zgyA	272	73.19	a.123.1.1	125064
2hnlA	225	76.72		
1qn2A	100	77.05	a.3.1.1	15882
2yzjA	169	77.25		
2ebn	289	78.37		
1jlvA	209	79.75	a.45.1.1,c.47.1.5	71729,71730
1a0fA	201	80.15	a.45.1.1,c.47.1.5	17737,33031
2e50A	225	86.09		
4ubpA	101	87.11	d.8.1.1	37352
1hroA	106	88.46	a.3.1.1	15897
1hynP	379	88.61	d.112.1.2	61408