# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	2.313		
1jdc	429	4.246		
2gdrA	202	4.456		
2uz8A	174	7.589		
2pt5A	168	9.493		
2q22A	139	10.34		
2cz2A	223	12.19		
1kagA	173	13.71	c.37.1.2	72249
2aiuA	105	13.97		
1jdcA	429	15.30	b.71.1.1,c.1.8.1	27789,28776
3cjhB	64	17.60		
1jlvA	209	23.96	a.45.1.1,c.47.1.5	71729,71730
1ew0A	130	24.58	d.110.3.2	40905
2ntoA	201	27.16		
1vqoD	177	33.73	d.77.1.1	120365
1v2aA	210	35.19	a.45.1.1,c.47.1.5	100263,100264
1e43A	483	35.40	b.71.1.1,c.1.8.1	59217,59218
1dunA	134	37.45	b.85.4.1	28371
2b0zB	108	37.58		
1wpoA	256	37.87	b.57.1.1	27012
1ctjA	89	38.09	a.3.1.1	15798
2b10B	108	39.32		
1gdvA	85	39.65	a.3.1.1	60458
1eg7A	557	40.44	c.37.1.10	32241
1ht6A	405	41.75	b.71.1.1,c.1.8.1	83629,83630
2acmA	66	43.66		
1fipA	98	44.44	a.4.1.12	18980
1v9yA	167	46.17	d.110.3.2	108454
2b12B	108	47.24		
1zgyA	272	47.58	a.123.1.1	125064
1n2aA	201	50.42	a.45.1.1,c.47.1.5	91553,91554
2hnlA	225	50.72		
1e29A	135	51.21	a.3.1.1	59161
1t07A	94	52.44	d.279.1.1	106196
1m7xA	617	55.91	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
3bsoA	510	56.84		
1yccA	108	57.33	a.3.1.1	15834
1njgA	250	58.51	c.37.1.20	85785
1a0fA	201	61.44	a.45.1.1,c.47.1.5	17737,33031
2i7vA	459	62.12		
2os5A	119	63.81		
2b02A	119	65.69		
1wzlA	585	69.82	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
2ebn	289	70.04		
2pqqA	149	71.26		
1wv9A	94	71.31		
1jlwA	219	71.64	a.45.1.1,c.47.1.5	71741,71742
1ccrA	111	72.06	a.3.1.1	15877
2hmcA	344	72.09		
1u7eB	154	74.74		
1sseB	86	76.50		
2iojA	139	77.14		
1qn2A	100	79.36	a.3.1.1	15882
1smd	496	79.55		
2b11B	108	80.24		
1jbwA	428	80.66	c.59.1.2,c.72.2.2	62860,62861
2bj7A	138	81.67	a.43.1.3,d.58.18.4	128608,128609