# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2q22A	139	0.8573		
2nq2C	253	2.702		
1cex	214	3.467		
2it1A	362	5.700		
1b0uA	262	6.268	c.37.1.12	32370
1oxsC	353	9.652	b.40.6.3,c.37.1.12	87519,87520
2b02A	119	10.34		
1g291	372	10.55		
1to6A	371	11.95	c.141.1.1	107170
1cexA	214	12.59	c.69.1.30	31285
1oxxK	353	12.68	b.40.6.3,c.37.1.12	93715,93716
2pcjA	224	12.75		
1z47A	355	13.19		
1g6hA	257	13.50	c.37.1.12	60318
2ihyA	279	13.56		
3cj1A	456	15.79		
2i9fA	69	18.72		
2p71A	132	21.84	a.39.2.1	139516
2couA	109	23.12		
3b6eA	216	24.68		
2yruA	118	25.42		
1z7yA	322	25.58	c.79.1.1	124679
2hpsA	186	29.75		
1lswA	131	32.58	d.110.3.2	78181
2dznB	82	33.24		
1ji0A	240	33.33	c.37.1.12	71665
1rroA	108	36.32	a.39.1.4	17195
1ispA	181	36.36	c.69.1.18	76778
1kutA	230	37.27	d.143.1.1	73017
1s5lU	134	38.50		
1t15A	214	38.53	c.15.1.3,c.15.1.3	99067,99068
2qi9C	249	39.40		
1m7sA	484	39.92	e.5.1.1	74574
3tglA	269	41.56	c.69.1.17	34733
2vqeM	126	41.73		
1l2tA	235	43.68	c.37.1.12	73514
1rwyA	109	46.22	a.39.1.4	98002
1at3A	247	48.72	b.57.1.1	27021
1rkpA	326	48.75	a.211.1.2	97620
1i6wA	181	48.91	c.69.1.18	61859
1s21A	206	49.79	d.166.1.4	105222
1tbbA	332	51.09	a.211.1.2	106741
2r18A	139	53.94		
2prrA	197	54.20		
2iqcA	210	54.80		
2q3bA	313	55.45		
1vplA	256	55.56	c.37.1.12	113966
1kpeA	126	56.03	d.13.1.1	37508
1cdzA	96	56.56	c.15.1.1	30925
1erdA	40	56.61	a.10.1.1	16362
1xvjA	109	57.01		
2uubR	88	57.44	a.4.8.1	139949
1ew0A	130	59.37	d.110.3.2	40905
1m85A	484	60.34	e.5.1.1	74578
4cpvA	108	61.66	a.39.1.4	17198
2vlgA	111	62.90		
1qjtA	99	63.35	a.39.1.6	17335
1dqeA	137	65.74	a.39.2.1	17388
1xyzA	347	67.09	c.1.8.3	28804
2qk2A	242	70.90		
3bv4A	341	71.32		
1xj4A	119	73.74	d.110.3.2	122027
1ro5A	201	74.70	d.108.1.3	105023
1j99A	293	74.94	c.37.1.5	71618
3xis	387	75.75		
3bqsA	93	76.02		
1th8A	145	76.95	d.122.1.3	106908
2dkzA	84	77.04		
1g5bA	221	77.62	d.159.1.3	60261
1zaiA	363	78.11	c.1.10.1	124828
2d2eA	250	79.90		
1kpf	126	80.35		
1u7eB	154	82.26		
1xl7A	612	82.92	c.43.1.3,c.43.1.3	115438,115439
1nd6A	354	85.09	c.60.1.2	80407
3cz8A	319	85.09		
2oyoA	196	87.15		
1y2kA	349	88.22	a.211.1.2	122571