Best Alignments for T0489

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2e62A	4.5502e+00	2e62A/T0489-2e62A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ie9A	1.1452e+01	1ie9A/T0489-1ie9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
1ds1A	2.5957e+01	1ds1A/T0489-1ds1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1nyoA	2.6465e+01	1nyoA/T0489-1nyoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1otjA	3.1504e+01	1otjA/T0489-1otjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.82.2.5
1db1A	3.1757e+01	1db1A/T0489-1db1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
1g2nA	3.2854e+01	1g2nA/T0489-1g2nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1hg4A	3.8610e+01	1hg4A/T0489-1hg4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qkmA	3.9024e+01	1qkmA/T0489-1qkmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1s9pA	4.1173e+01	1s9pA/T0489-1s9pA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
2q22A	4.5367e+01	2q22A/T0489-2q22A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1g5yA	4.6253e+01	1g5yA/T0489-1g5yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
2db2A	4.8928e+01	2db2A/T0489-2db2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1prgA	4.9228e+01	1prgA/T0489-1prgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pzlA	5.1468e+01	1pzlA/T0489-1pzlA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1a52A	5.1870e+01	1a52A/T0489-1a52A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ymtA	5.2935e+01	1ymtA/T0489-1ymtA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1o70A	5.3750e+01	1o70A/T0489-1o70A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1iazA	5.4367e+01	1iazA/T0489-1iazA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.97.1.1
1oshA	5.5321e+01	1oshA/T0489-1oshA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001