# List of top-scoring protein chains for T0489.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tzqA	175	3.619	b.97.1.1	107522
1iazA	179	3.698	b.97.1.1	62131
1kd6A	179	3.698	b.97.1.1	68459
1a28A	256	12.10	a.123.1.1	19290
1e3kA	258	12.27	a.123.1.1	59193
1sr7A	259	12.33	a.123.1.1	105957
1pk1A	89	12.44	a.60.1.2	118711
1sqnA	261	12.46	a.123.1.1	105944
1gwyA	175	22.05	b.97.1.1	83356
2nygA	273	36.75		
1xa6A	466	42.29	a.116.1.1,d.93.1.1,g.49.1.1	115030,115031,115032
1w3eX	101	44.96		
1w40A	101	48.67		
1w42A	101	49.19		
1h7mA	102	49.68	d.79.3.1	83485
1t07A	94	53.15	d.279.1.1	106196
1w41A	101	54.59		
1wzaA	488	71.52	b.71.1.1,c.1.8.1	121489,121490
1kw4A	89	74.37	a.60.1.2	73077
1c3yA	108	77.71	a.39.2.1	17387
1culC	380	79.15	a.66.1.1,c.37.1.8	18204,32087
1cs4C	394	80.03	a.66.1.1,c.37.1.8	18205,32088
1azsC	402	80.15	a.66.1.1,c.37.1.8	18203,32086
2q3yA	249	82.42		
1z95A	246	82.55		
2q1hA	250	83.72		
2qhpA	296	86.02		
1y9rA	255	86.03		
2oaxA	256	86.90