# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1otjA	283	9.393	b.82.2.5	93517
2e62A	61	14.14		
1ea9C	583	22.83	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
1jayA	212	32.09	c.2.1.6	66478
2q22A	139	33.74		
1m7xA	617	41.44	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
1kd6A	179	42.36	b.97.1.1	68459
2pl5A	366	42.62		
2os5A	119	44.10		
1sxjC	340	45.91	a.80.1.1,c.37.1.20	106085,106086
1gwyA	175	46.63	b.97.1.1	83356
2guyA	478	47.30	b.71.1.1,c.1.8.1	135754,135755
1iazA	179	49.35	b.97.1.1	62131
1ie9A	259	49.68	a.123.1.1	62318
2aaaA	484	51.42	b.71.1.1,c.1.8.1	27777,28764
2r40D	266	51.98		
1nu5A	370	61.76	c.1.11.2,d.54.1.1	92183,92184
2zl4A	196	63.12		
1ehaA	558	63.80	b.1.18.2,b.71.1.1,c.1.8.1	21859,27786,28773
1bplB	294	65.49	b.71.1.1	27716
1ayl	541	67.08		
2qniA	219	69.07		
1gtzA	156	69.80	c.23.13.1	70539
1lfbA	99	70.50	a.4.1.1	15989
1jdc	429	74.09		
2cbyA	208	74.48	c.14.1.1	130202
1u7eB	154	75.46		
1u09A	476	77.03	e.8.1.4	107545
1zybA	232	77.31	a.4.5.4,b.82.3.2	125815,125816
2nvaA	372	77.85		
2z69A	154	77.95		
2qz7A	194	81.02		
1x54A	434	82.28		
1tkeA	224	84.31	d.15.10.1,d.67.1.1	112470,112471
1jdcA	429	85.98	b.71.1.1,c.1.8.1	27789,28776
1siqA	392	87.83	a.29.3.1,e.6.1.1	105585,105586
2aibA	98	89.31	a.134.1.1	126824