# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1otjA	283	5.389	b.82.2.5	93517
2e62A	61	10.15		
1jayA	212	21.60	c.2.1.6	66478
1m7xA	617	26.35	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
1sxjC	340	27.92	a.80.1.1,c.37.1.20	106085,106086
2pl5A	366	30.44		
2q22A	139	38.59		
1s9pA	227	38.99	a.123.1.1	105384
1ie9A	259	39.13	a.123.1.1	62318
2aibA	98	40.28	a.134.1.1	126824
1kd6A	179	48.98	b.97.1.1	68459
2qniA	219	54.16		
1u7eB	154	56.53		
2r40D	266	57.84		
2nvaA	372	57.97		
1ea9C	583	58.17	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
1o6eA	235	59.57	b.57.1.1	81083
1iazA	179	62.73	b.97.1.1	62131
2z69A	154	63.56		
1zybA	232	63.96	a.4.5.4,b.82.3.2	125815,125816
2zl4A	196	64.38		
1gwyA	175	65.49	b.97.1.1	83356
1j0mA	752	66.47	a.102.3.2,b.24.1.1,b.30.5.2	83910,83911,83912
1lfbA	99	70.80	a.4.1.1	15989
2os5A	119	70.85		
2bj7A	138	74.20	a.43.1.3,d.58.18.4	128608,128609
1rl3A	288	74.87	b.82.3.2,b.82.3.2	104975,104976
1db1A	259	78.51	a.123.1.1	19329
3cjhB	64	85.56		
1go3F	107	85.85	a.60.8.2	65407
1tkeA	224	89.22	d.15.10.1,d.67.1.1	112470,112471
1g3nC	257	89.58	a.74.1.1,a.74.1.1	18366,18367