# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1otjA 283 4.061 b.82.2.5 93517 2e62A 61 6.338 1fgkA 310 8.493 d.144.1.7 41693 1zybA 232 9.651 a.4.5.4,b.82.3.2 125815,125816 1j0mA 752 13.90 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 1u7eB 154 14.43 1ie9A 259 14.59 a.123.1.1 62318 2q22A 139 14.73 2os5A 119 16.48 1jayA 212 18.87 c.2.1.6 66478 2qniA 219 22.01 2d93A 134 22.16 1s9pA 227 22.83 a.123.1.1 105384 1gwyA 175 23.67 b.97.1.1 83356 2aaxA 275 24.44 2z69A 154 26.80 1iazA 179 27.96 b.97.1.1 62131 2r40D 266 28.59 1rl3A 288 32.96 b.82.3.2,b.82.3.2 104975,104976 1kd6A 179 33.27 b.97.1.1 68459 2qz7A 194 34.31 1m7xA 617 34.40 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1ea9C 583 34.66 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2om6A 235 34.91 1a28A 256 35.66 a.123.1.1 19290 2ywwA 149 38.96 1xo0A 324 38.99 a.60.9.1,d.163.1.1 115674,115675 1o6eA 235 39.37 b.57.1.1 81083 2nruA 307 41.52 1e29A 135 41.61 a.3.1.1 59161 1jqhA 308 44.91 d.144.1.7 71793 1ne6A 283 46.49 b.82.3.2,b.82.3.2 91831,91832 1db1A 259 47.43 a.123.1.1 19329 1ehaA 558 54.91 b.1.18.2,b.71.1.1,c.1.8.1 21859,27786,28773 2gauA 232 55.18 a.4.5.4,b.82.3.2 134894,134895 1el4A 195 56.55 a.39.1.5 59453 2posA 94 56.69 1p5dX 463 56.97 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 3cjhB 64 57.14 2pqqA 149 57.77 1smdA 496 61.66 b.71.1.1,c.1.8.1 27768,28755 1lfbA 99 61.84 a.4.1.1 15989 1wv9A 94 62.91 2zl4A 196 63.37 1xiuA 230 63.40 1w1oA 534 67.47 d.58.32.4,d.145.1.1 109071,109072 1rgs 288 67.79 1k2pA 263 68.81 d.144.1.7 72012 1lufA 343 69.43 d.144.1.7 78223 4crxA 322 69.87 a.60.9.1,d.163.1.1 18095,42155 2guyA 478 70.63 b.71.1.1,c.1.8.1 135754,135755 2javA 279 72.34 d.144.1.7 138243 1wpoA 256 72.45 b.57.1.1 27012 1oshA 232 73.49 a.123.1.1 93496 1kbuA 349 73.69 a.60.9.1,d.163.1.1 72284,72285 1o7fA 469 75.61 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1g5yA 238 76.98 a.123.1.1 60294 1bplB 294 77.43 b.71.1.1 27716 1vp6A 138 79.10 b.82.3.2 113939 1go3F 107 81.79 a.60.8.2 65407 2rkhA 180 82.02 1hv9A 456 82.75 b.81.1.4,c.68.1.5 28060,34518 2i9fA 69 83.53 1tbbA 332 83.81 a.211.1.2 106741 2qngA 199 85.28 2fvhA 120 85.29 1tbfA 347 85.77 a.211.1.2 106743 1acfA 125 86.82 d.110.1.1 40882 1t7rA 269 88.59 a.123.1.1 106635 1hx0A 496 89.60 b.71.1.1,c.1.8.1 61346,61347 2og9A 393 89.97